PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G12480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 186aa    MW: 19792.5 Da    PI: 8.4774
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G12480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-172574155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+++l+g
  LPERR10G12480.1 25 PVYRGVRMR--AGKWVSEIRElR-----KpSRIWLGTYATPEMAAAAYDAAALALRG 74
                     68****975..6*********66.....68*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-112574IPR001471AP2/ERF domain
SMARTSM003801.8E-252688IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-182683IPR016177DNA-binding domain
PROSITE profilePS5103218.9272682IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-262683IPR001471AP2/ERF domain
PRINTSPR003676.9E-72738IPR001471AP2/ERF domain
PRINTSPR003676.9E-76484IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MYVQRASTMV VQQGRRRARA ETRHPVYRGV RMRAGKWVSE IRELRKPSRI WLGTYATPEM  60
AAAAYDAAAL ALRGRAAPLN FPDAALSRPA PQSVSPDDVR AAAAAAAAAN AAACRSGGAG  120
EDNDRFRQGG GVMVDEDDVL EMPRLMVSMA EGLMISPPPV VTSMEADGGG LIDEAGGGVM  180
RLWDHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1324821272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G12480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0788947e-83AC078894.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence.
GenBankAP0149667e-83AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY2582807e-83AY258280.1 Oryza sativa (japonica cultivar-group) CR103 transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613984.12e-53ethylene-responsive transcription factor ERF027
SwissprotQ9SJR01e-39ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0D9XLR11e-129A0A0D9XLR1_9ORYZ; Uncharacterized protein
STRINGLPERR10G12480.11e-129(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-20ERF family protein