PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G11580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family YABBY
Protein Properties Length: 292aa    MW: 31348.8 Da    PI: 9.0289
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G11580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY206.88.1e-64562535170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................lleel 75 
                      +  eq+Cyv+C +C+t+l+vsvPs+sl+k+vtvrCGhC+sll+vn++      +++    ++  ++                            
  LPERR10G11580.1  56 EEQEQLCYVHCHYCDTVLVVSVPSSSLYKTVTVRCGHCSSLLTVNMMRGLLFPTTTLPTTTTAAPPpppahlfphssllldemsstnnqR---- 145
                      6789*****************************************987764433333334444444688899999999655544444431.... PP

            YABBY  76 kveeenlksnvekeesastsvssekl..................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishr 150
                             +  +++++     ++s                      +  +e +pr+   ++rPPekrqrvPsaynrfik+eiqrika+nPdishr
  LPERR10G11580.1 146 ------QQLLQMEQHGIGGMMASAAAarcrnnaaaqpppaaatqGKGAKEPSPRTNTvINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHR 233
                      ......222222222221111111112223444456777777666667788999888689********************************** PP

            YABBY 151 eafsaaaknWahfPkihfgl 170
                      eafsaaaknWahfP+ihfgl
  LPERR10G11580.1 234 EAFSAAAKNWAHFPHIHFGL 253
                      ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.8E-6557253IPR006780YABBY protein
SuperFamilySSF470953.67E-8191246IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.4E-4202245IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MPSSSSSSAA SAASSFLPVQ KQEQQMVVAV DNLPPPATAA MQQQQLVSPA TAAAEEEQEQ  60
LCYVHCHYCD TVLVVSVPSS SLYKTVTVRC GHCSSLLTVN MMRGLLFPTT TLPTTTTAAP  120
PPPPAHLFPH SSLLLDEMSS TNNQRQQLLQ MEQHGIGGMM ASAAAARCRN NAAAQPPPAA  180
ATQGKGAKEP SPRTNTVINR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI SHREAFSAAA  240
KNWAHFPHIH FGLMPDHQGL LKKTSLLPQR KDGLLKDGLY AAAAANMGVA PY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G11580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740151e-103AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982656.11e-109protein YABBY 3
SwissprotQ8L5561e-103YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A0D9XLC30.0A0A0D9XLC3_9ORYZ; Uncharacterized protein
STRINGLPERR10G11580.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-46YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]