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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR10G09970.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
ARF |
Protein Properties |
Length: 707aa MW: 77074.5 Da PI: 7.9397 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR10G09970.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 73.8 | 2.1e-23 | 140 | 241 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF ++
LPERR10G09970.1 140 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RT 229
89****************************996555555..8999*********************************************..45 PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
+ +el+v+++r+
LPERR10G09970.1 230 RVGELCVGIRRA 241
79999****997 PP
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2 | Auxin_resp | 117.3 | 1.3e-38 | 297 | 380 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa+ a+++++Fev Y+Prast+eFvvk+ +v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+
LPERR10G09970.1 297 AASLAANGQPFEVAYYPRASTPEFVVKATSVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 380
68899*****************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 707 aa
Download sequence Send
to blast |
MEEERCLDPQ LWHACAGGMV QMPAARSRVY YFAQGHAEHA NGGGAAAELA AAAPRALRRN 60 EWYKKGNYGE ALRHXRALPP LVLCRVDGVR FLADPDTDEV FAKIRLSPVS PAEVDFRDSP 120 EQLCPLAGGD GESPEKPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YRADPPVQTV 180 LAKDVHGEVW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRTR VGELCVGIRR 240 AKRVACGGME CMSGWNAPGY GGFSAFLKEE ESKLMKGAGG GYMRGRGKVK IADVVEAASL 300 AANGQPFEVA YYPRASTPEF VVKATSVQAA MRIQWCSGMR FKMAFETEDS SRISWFMGTI 360 SSVQVADPNR WPNSPWRLLQ VTWDEPDLLQ NVKCVSPWLV ELVSSIPPIH LGPFSPPRKK 420 LRVPPHPDFP FEGHLLNPIF HGNPLGPSNS PLCCYPDTAP AGIQGARHAQ FGLPLTDHQL 480 NKLHLGLFHG GSFNRLDAIT PPSRISKGFV VSTAPAHDNV PCLLSIGTPQ STEKSDDRKT 540 TPHIMLFGKA IFADQQITSS RSLETLSPGV TANSSPNGNV QKAGNASDGS GSSICIGFSP 600 HGRGASDLGL EAGHCKVFME SEDVGRTIDL SVFGSYEELY GRLADMFGIE KEEIINHLHY 660 RDAAGVVKHT GEVPFGDFMK VARRLTIIAG DGGRIERPLI QCLVEQA
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK318617 | 0.0 | AK318617.1 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence. |