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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR10G08470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 124aa MW: 13245.5 Da PI: 8.8984 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 11 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +g+++AeIrdp + +r++lg+f+taeeAa+a+++a+ + +g LPERR10G08470.1 11 TKYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAQRG 62 69********.**********8333..4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.39E-22 | 11 | 72 | No hit | No description |
Pfam | PF00847 | 1.6E-14 | 11 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-23 | 12 | 71 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.289 | 12 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 12 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-33 | 12 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-12 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-12 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MEDDRSKDTA TKYRGVRKRP WGKFAAEIRD PERGGARVWL GTFDTAEEAA RAYDRAAFAQ 60 RGAAAVLNFP ATATARGGAS GSSSSSAQRG GGGGHGGRGE KIEFEYLDDK VLDDLLDDNK 120 YGGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-30 | 12 | 111 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR10G08470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC025907 | 4e-77 | AC025907.2 Oryza sativa Japonica Group cultivar japonica chromosome 10 clone nbxb0094K20, complete sequence. | |||
GenBank | AP014966 | 4e-77 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 4e-77 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464556.2 | 1e-43 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LTC5 | 3e-36 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A0D9XK62 | 5e-82 | A0A0D9XK62_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR10G08470.1 | 8e-83 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 6e-18 | ERF family protein |
Publications ? help Back to Top | |||
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