PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G08170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family E2F/DP
Protein Properties Length: 264aa    MW: 29606.4 Da    PI: 5.97
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G08170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.91.7e-2311061471
          E2F_TDP  14 lklleksee.givtlnevakeLvse................................................dvknkrRRiYDilNVLealnl 58 
                      +k++ek+e+ g++t+neva+eLv+e                                                d+kn+rRR+YD+lNVL+a+++
  LPERR10G08170.1   1 MKVCEKVESkGRTTYNEVADELVAEfadpnnnfappdpdnphiavkkydyspwflicyffcnadyvnitqqqfDEKNIRRRVYDALNVLMAMDI 94 
                      589****999************************************************************************************ PP

          E2F_TDP  59 iekkekneirwkg 71 
                      i+k +k+ei+wkg
  LPERR10G08170.1  95 ISK-DKKEIQWKG 106
                      ***.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023199.3E-211106IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.72E-14119IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.2E-36138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-201106IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.72E-1454107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.2E-3673112IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.07E-31111205IPR014889Transcription factor DP, C-terminal
SMARTSM011387.6E-59113262IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.14E-33113208No hitNo description
PfamPF087814.4E-31114234IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKVCEKVESK GRTTYNEVAD ELVAEFADPN NNFAPPDPDN PHIAVKKYDY SPWFLICYFF  60
CNADYVNITQ QQFDEKNIRR RVYDALNVLM AMDIISKDKK EIQWKGLPKT SMSDIDNLKT  120
KIIGQKGRID KKSAYLQELQ DQRNEQLYGS GNAPSGGVAL PFILVQTRPQ ATVEVEISED  180
MQLVHFDFNS TPFELHDDSF VLKALGFSGK ESNGAEAAVA NGGECSSTPN IYHQSPQIAR  240
PNGVRLPTSP PIPGILKGRV KHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2711111793PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G08170.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409891e-125AK240989.1 Oryza sativa Japonica Group cDNA, clone: J065051E11, full insert sequence.
GenBankAK2878091e-125AK287809.1 Oryza sativa Japonica Group cDNA, clone: J065179H06, full insert sequence.
GenBankAY2245511e-125AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614876.11e-148transcription factor-like protein DPB
RefseqXP_015697184.11e-149PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY24e-92DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D9XK270.0A0A0D9XK27_9ORYZ; Uncharacterized protein
STRINGLPERR10G08170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-90Transcription factor DP