PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR10G07380.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HSF | ||||||||
Protein Properties | Length: 397aa MW: 45058.7 Da PI: 4.7597 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.3 | 5.9e-34 | 46 | 137 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y+++ed++ + ++sws+ gnsfvv+d++ fa+ +Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll+ LPERR10G07380.2 46 FLTKTYDLVEDPASDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLK 130 9****************************************************************999.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +ikr+k LPERR10G07380.2 131 TIKRRKP 137 ****985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.31E-35 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.0E-37 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.5E-60 | 42 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-19 | 46 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.6E-31 | 46 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-19 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 85 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-19 | 97 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MDPAAAGIVK EEMVEAAQQN GGGGGVGAAA APRPMEGLHE VGPPPFLTKT YDLVEDPASD 60 GVVSWSRAGN SFVVWDPHVF ADLLLPRLFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG 120 FLRGQRHLLK TIKRRKPPSN APPSQQQSLT SCLEVGEFGF EEEIDRLKRD KNILISEVVK 180 LRQEQQATKD HVKAMEDRLR AAEQKQVQMM GFLARAMRNP EFFQQLAQQK EKRKELEDAI 240 SKKRRRPIDN VPFYSPGETS QTEQLDSSYL FDSGVLNDFS EPGIPELENL AVNIQDLGKG 300 KVDEEKQDQA NRQTELGDDF WAELLVEDFA GKEEQSELDG TVEGIDELAQ QLGLYLQDTI 360 DLWKYNRLHK VFMVIPRLWT PCPEAVYTYC FAIDRGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-25 | 44 | 135 | 18 | 120 | Heat shock factor protein 1 |
5hdg_A | 3e-25 | 44 | 135 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 3e-25 | 44 | 135 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 3e-25 | 44 | 135 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 3e-25 | 44 | 135 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 3e-25 | 44 | 135 | 8 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 134 | LKTIKRR |
2 | 231 | 245 | KRKELEDAISKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR10G07380.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY344488 | 0.0 | AY344488.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876421.1 | 0.0 | heat stress transcription factor A-2c-like | ||||
Swissprot | Q338B0 | 0.0 | HFA2C_ORYSJ; Heat stress transcription factor A-2c | ||||
TrEMBL | A0A0D9XJS4 | 0.0 | A0A0D9XJS4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR10G07380.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-111 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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