PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G06560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 382aa    MW: 42029.8 Da    PI: 5.0262
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G06560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.5e-12167211347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT +E+e ++ +v+ +G g+Wk I++ +   Rt+ q+ s+ qky
  LPERR10G06560.1 167 FWTNDEHEMFLMGVNVYGRGDWKNISKFFVPSRTPSQVSSHAQKY 211
                      5*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.379159216IPR017930Myb domain
SMARTSM007176.3E-11164214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-11164218IPR009057Homeodomain-like
SuperFamilySSF466892.15E-16165217IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-14167215IPR006447Myb domain, plants
CDDcd001674.16E-10168212No hitNo description
PfamPF002495.1E-9168211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDPMFSGMEW TAVEKGEARS VVARLNNNNF DVVSAGNGNN NDTRHDRIVR EIEALFPWMT  60
KNQVINSYVD TVVDMMMAPT LPYEVGAAAH TNSKPMKENF GMLPREDPMN SVDLSMINNN  120
NMVFGDASMG DTVEQASPAS MVVNGSNEVN QGNSYQRATP NSGKSKFWTN DEHEMFLMGV  180
NVYGRGDWKN ISKFFVPSRT PSQVSSHAQK YFRRQEKTDK KQRYSINDVV LKKPLVNNNY  240
GGWQALAFAG GHLQPTSGYG TAGHVAPLAN STSSVAAMNN VAQFCAPLLY NSETQQQFTQ  300
MQIQPQQAWN DQQMMGTAAL APMEGSAAWN AAPMEGAADN FAPAGRAADN FAPIGGSGYY  360
QQEQGTGYDV PAELWMMNNN MF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G06560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693466.12e-89PREDICTED: uncharacterized protein LOC107304324
TrEMBLA0A0D9XJG40.0A0A0D9XJG4_9ORYZ; Uncharacterized protein
STRINGLPERR10G06560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-20MYB family protein