PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G06020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 778aa    MW: 90789.3 Da    PI: 7.3778
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G06020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.4e-10690711526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ +++ G+CkyG++CkF H 
  LPERR10G06020.1 690 PCHSYQQQGWCKYGENCKFLHE 711
                      8********************5 PP
2zf-CCCH30.56.2e-10724745526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G+CkyG++CkF H 
  LPERR10G06020.1 724 PCHSFQQQGWCKYGENCKFLHE 745
                      8********************5 PP
3zf-CCCH26.79.8e-09758777525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C+++++ G+CkyGd+CkF H
  LPERR10G06020.1 758 PCHNYRQ-GWCKYGDNCKFLH 777
                      8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.4E-5111155IPR003034SAP domain
SuperFamilySSF689063.89E-5111154No hitNo description
PROSITE profilePS5010315.047685713IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6687714IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025687712IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-7689712IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7690711IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338719747IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6720748IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-4721746IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-7723747IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7724745IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549753778IPR000571Zinc finger, CCCH-type
SMARTSM003561.7755778IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5756778IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5757777IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6758777IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MAAAADHRAE EEEEVDDVEE EGSEEEEVES GDEEEEEEDD DEAASLADIC APDAGSDEDP  60
TFDPAADGDL EVEAVLRSRM ARMSISARKG RKGSRMPEMG KEEMGLLSMV DKLMQDGQLE  120
KLKVYDCKAY LRMHKLRLSG NKEVLLSLIR EHIEKKGAPR GVKGHLCGQR TNAGRIIKES  180
YGTKKQQHTF TIEILWSKGH KPWPPLHPLL IKGRNLCKDK TMRQPWPDEA ERNRVLQEKH  240
ARGYVARKTR EVRIKEKENR RMKRLNRNKE NKSKGHDKMN KMTSQESLPQ QMVIMSKRQQ  300
NMSNKSSQEV LPLQTVTMNT VQQRSNEKTI PSAQHDEPGN IWQQQMSPKQ IPAEQYFDYH  360
CLFPCPQQHN EELQKGTSRT SAAQLINREA PLQRDVKAET LHQLPESSKA TLIQQSSAYP  420
QQYPKHQHQN EVLPQAGPPQ VQRTAVSQTT DVRQDFINQQ GIPSKLYGGS ENMRQQPISS  480
RPTTTPQQAV KYTQQPPNHQ YKNEVFWQQA GTDHDKQASQ PRRTFTQKAK TYQHGSNGHH  540
QALIDQLESP RNQDYYWGEE SYEEDCSDHG KLNQGKYFSE QNVDHIPHRP LTPRNKDYYW  600
GEESYGQGYN GDGKMDQGQY DFQQRHHGRR QMSQYQYDHR QNNYQNSHGN WGMNGNQYHD  660
EQNHNQTYND HGQMNRNQSQ SPQRFQPWQP CHSYQQQGWC KYGENCKFLH EPNQSPRQFQ  720
PWKPCHSFQQ QGWCKYGENC KFLHEPDQNP RRFQPWQPCH NYRQGWCKYG DNCKFLHE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G06020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0917343e-48AC091734.3 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence.
GenBankAP0149663e-48AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126183e-48CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876398.10.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A0D9XJ980.0A0A0D9XJ98_9ORYZ; Uncharacterized protein
STRINGLPERR10G06020.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-09C3H family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]