 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR10G05640.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 282aa MW: 30671.6 Da PI: 4.8249 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR10G05640.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.2 | 6.6e-19 | 48 | 101 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ +eq+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k
LPERR10G05640.1 48 KKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 101
4557899**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 126.3 | 1.3e-40 | 47 | 139 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl++eqv++LE+sFe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d+++L++++dal+ e ++L++++++L++e+++
LPERR10G05640.1 47 EKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFASLRSRHDALRLECDSLRRDKDSLAAEIAS 139
69**************************************************************************************99875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MKRPTCRGSS MAIQDTSDQQ EENMMRYDDE EDEDMDDGGG GGGGLGEKKR RLAAEQVRAL 60
ERSFEADNKL DPERKARIAR DLRLHPRQVA VWFQNRRARW KTKQIERDFA SLRSRHDALR 120
LECDSLRRDK DSLAAEIASL RLKLLNCSKS DSAAVKLEIE NAAAGDEQPP VTTAMTIIPN 180
SNNGGGAGTD SDSSAVFNEE ASPYSGAAID HHQTPASYDT PAAAGLASFF APNSSTNSSF 240
ASMFHPSTHF EQELLAGGDL GGGFFAGEEH AGGLSWYGAE GW
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 95 | 103 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC079935 | 1e-136 | AC079935.3 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence. |
| GenBank | AK243294 | 1e-136 | AK243294.1 Oryza sativa Japonica Group cDNA, clone: J100053F20, full insert sequence. |
| GenBank | AP014966 | 1e-136 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | AY346329 | 1e-136 | AY346329.1 Oryza sativa (indica cultivar-group) homeodomain leucine-zipper protein Hox8 mRNA, complete cds. |
| GenBank | CT837674 | 1e-136 | CT837674.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120C09, full insert sequence. |
