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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR10G05620.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 340aa MW: 36322 Da PI: 6.2327 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR10G05620.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 47.5 | 3.3e-15 | 121 | 172 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+++L+
LPERR10G05620.1 121 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 172
79****************************...*******************995 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MALEAEVYSH GGHFGGYGLM GGCPAAPWCI GDDVFTAVGD SSGEPCGGSW DDTIFVPPLN 60 VQDMVDEWDQ VVDQCASSCK AAAAAAAAAE IGETPVVVKA AAKRKRRRAK AVKNKEEIES 120 QRMTHIAVER NRRRQMNDYL AVLRSLMPPS YAQRGDQASI VGGAINYVRE LEQLLQNIEA 180 KKSIKNIHND GDVGAGEHAS PFAGFFTFPQ YSTSGHGGGD AHRSRIVNSA EATAAGVGSD 240 SGAAIADIEA SMAEGHVSVK VQARWRPRQL LKLVAGLHHL GLTTLHLNVT TVNAMVMYCF 300 SLKVEDACKL GSVEEIATAV HEILQRIQEE QALVDAKTGL
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 102 | 107 | KRKRRR |
2 | 103 | 107 | RKRRR |
3 | 121 | 132 | RMTHIAVERNRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK058809 | 0.0 | AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence. |