PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR10G04210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 252aa MW: 28342.6 Da PI: 6.9036 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 66.3 | 4.7e-21 | 56 | 117 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 Dg+ WrKYG K++k+s fpr YYrC+++ +C+++k v++++ dp + +tY +H+++ LPERR10G04210.1 56 TDGHLWRKYGEKKIKNSSFPRLYYRCSYRddrNCMATKVVQQENeADPPLYRVTYIHQHTCN 117 7***************************99999*******9865269*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 7.72E-22 | 51 | 117 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.9E-22 | 54 | 117 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-34 | 55 | 118 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.158 | 56 | 119 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-24 | 57 | 116 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MATSRHLLQT MQFTESASRS PRPGGALGPS SPFSSRKPRL QEGHPTCVNL TPIPHTDGHL 60 WRKYGEKKIK NSSFPRLYYR CSYRDDRNCM ATKVVQQENE ADPPLYRVTY IHQHTCNSSL 120 PAPTPADVFA EPPPPTKSEH PVLFRFSSTG RHTANNADPA LHHHQQQPPT TAEAAQAPEY 180 IRSGAPARRL SMFRAVVEGL RQMRSLVPPP SAMVDDGWDA FSAFDLDTCE FSLDDELPSG 240 DYDMYFQDNM QE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-15 | 57 | 116 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR10G04210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC099774 | 1e-41 | AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 1e-41 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 1e-41 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613415.2 | 1e-119 | probable WRKY transcription factor 32 | ||||
TrEMBL | A0A0D9XIM5 | 0.0 | A0A0D9XIM5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR10G04210.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16993 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01900.1 | 1e-19 | WRKY DNA-binding protein 62 |