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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR10G00500.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
BBR-BPC |
Protein Properties |
Length: 341aa MW: 37317.5 Da PI: 10.3115 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR10G00500.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 374.9 | 1.4e-114 | 1 | 337 | 1 | 300 |
GAGA_bind 1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdaki.........rernlalsekkaavaerd........................m 58
mdddg+ r +g +yep + +nlglqlmss++ +rd+k+ + + + + +++ +++r+ m
LPERR10G00500.1 1 MDDDGNITlRGWGgFYEPPPPPPRNLGLQLMSSVPaDRDTKQllsaspfmhH-HAH-QHVPHHQHHAREcggaggnggapnggmppteapsmnM 92
9****9999****9***9988888**********99******9988888632.333.4666777788889************************ PP
GAGA_bind 59 aflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeak 145
+f+++d++++ +++ r+ k+l+ l v ++ +++pvg+++++gt+s ++lq++++ +q ++++ + ++ee+++++ iee++++++
LPERR10G00500.1 93 NFVRNDMWMHP---QHHSRETKVLHTLNVGHGGHiahsaHHDPVGYGMIPGTHSGHTLQMMQQpeSQPQPQPPPPPKEECISSPLIEENVPVIS 183
***********...7899*********9999887888999********************8884455566666699****************** PP
GAGA_bind 146 ekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239
e + +kkrq++++pk+++ kk+kk +++++++ +++ +r++ ++k+i++v+ng++lD s++P+PvCsCtG+++qCY+WG+GGWqSaCCttti
LPERR10G00500.1 184 EPPPPKKRQQGRQPKVPRPKKPKK-PAAPREDGAPNPPATRRRGPRKNIGMVINGIDLDLSRIPTPVCSCTGSPQQCYRWGAGGWQSACCTTTI 276
************************.788888888777679****************************************************** PP
GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
S+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvti
LPERR10G00500.1 277 STYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTI 337
************************************************************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0050793 | Biological Process | regulation of developmental process |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MDDDGNITLR GWGGFYEPPP PPPRNLGLQL MSSVPADRDT KQLLSASPFM HHHAHQHVPH 60 HQHHARECGG AGGNGGAPNG GMPPTEAPSM NMNFVRNDMW MHPQHHSRET KVLHTLNVGH 120 GGHIAHSAHH DPVGYGMIPG THSGHTLQMM QQPESQPQPQ PPPPPKEECI SSPLIEENVP 180 VISEPPPPKK RQQGRQPKVP RPKKPKKPAA PREDGAPNPP ATRRRGPRKN IGMVINGIDL 240 DLSRIPTPVC SCTGSPQQCY RWGAGGWQSA CCTTTISTYP LPMSTKRRGA RIAGRKMSHG 300 AFKKVLEKLA GEGYNLNNPI DLKTFWAKHG TNKFVTISIT K
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |