PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

ERF

Protein Properties

Length: 129aa MW: 14396.8 Da PI: 8.9065

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G16370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.4	9.9e-20	13	64	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd s + r++lg+f+taeeAa+a+++ + +++g+ LPERR09G16370.1 13 KYRGVRRRP-WGKFAAEIRDSSR---HgVRVWLGTFDTAEEAARAYDRSAYSMRGA 64 8******.******432...25***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	9.79E-29	12	73	No hit	No description
SuperFamily	SSF54171	2.62E-23	13	72	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.92	13	71	IPR001471	AP2/ERF domain
SMART	SM00380	5.7E-33	13	77	IPR001471	AP2/ERF domain
Pfam	PF00847	2.9E-14	13	63	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.4E-31	13	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.2E-12	14	25	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.2E-12	37	53	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MDQQQDAGEL VAKYRGVRRR PWGKFAAEIR DSSRHGVRVW LGTFDTAEEA ARAYDRSAYS 60 MRGANAVLNF PADAHIYARQ QHQQNATRPP GSSSSAAGSN NARSPPIEFE YLDDQVLQDM 120 LRDAGNNNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-33	1	116	1	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G16370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006162	3e-72	AP006162.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1331F11.
GenBank	AP014965	3e-72	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	3e-72	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611263.1	8e-61	ethylene-responsive transcription factor ERF096
Swissprot	Q9LTC5	1e-33	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A0D9XH37	2e-90	A0A0D9XH37_9ORYZ; Uncharacterized protein
STRING	LPERR09G16370.1	3e-91	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	5e-35	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]