PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G16240.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 543aa    MW: 59513.7 Da    PI: 5.5295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G16240.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000982748223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     kC++C++ F ++ n++rH r+H
  LPERR09G16240.3 27 KCTKCSREFCSSINYRRHTRVH 48
                     7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6192648IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MPHARSSPVA DLPGWPLFSP PKLQLQKCTK CSREFCSSIN YRRHTRVHRR TLQIEKDFLK  60
NRDNIAAFWD RLTLDQAKTI LSLADVDIEG VSGPSILAAL TTWTCKPGYA SLPNAYARAG  120
NQLLDLIETT PSRLPVSSNE LFSMLDEASE NTFLCTNPTA SIKKFIFNGE ADKVATELKN  180
AVACTSYMLE QKLVEAWSAD KAAEALRCQK LLVEEEEAAQ KKQAELIERK RTKKLRQKVQ  240
RLKDLKDEDA IDHLPETLDC AADSSGTLSL KATLDPGLYE QEDPQYLSLP TPVASEDNNS  300
FVDLSVENGI PDPGHEVDSG VVLSQQAFSR HRLGRKENLA QNSFASGSAI GSKHAALARH  360
SHYRGTNVSA VSNKTKTWAW KARTEIEEHI AKDELNIDDG QVIGLNKKSR VLIGSISVAI  420
EDNSECLQDS KESPTATPAS QLNIGNNPVT KMVQPISDGE DGNGHTVHND VVVNITPTEE  480
NDSSSSVMPD GSSRSSCCNE GLAEDGVLRG TMFSSKEAAA FLSQRWKEAI TSDHVKLVLC  540
PDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227234ERKRTKKL
2232242KKLRQKVQRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G16240.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020350.0AK102035.1 Oryza sativa Japonica Group cDNA clone:J033081C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611822.10.0uncharacterized protein LOC4347911
RefseqXP_015611823.10.0uncharacterized protein LOC4347911
TrEMBLA0A0D9XH180.0A0A0D9XH18_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9XH190.0A0A0D9XH19_9ORYZ; Uncharacterized protein
STRINGLPERR09G16240.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.13e-84C2H2-like zinc finger protein