PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G16240.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 620aa MW: 67685.1 Da PI: 6.2942

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G16240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	131	152	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H LPERR09G16240.1 131 KCTKCSREFCSSINYRRHTRVH 152 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.619	130	152	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	132	152	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MTKKPLGLLP FPSFFGKKGR IGTIAGESRR AAAAEGLGSG EFGGKREERE EEVAARERET 60 TGSPHLAILL LLLLLVRVRF ASSSLACPPQ PPGSQSRSES NPKAMPHARS SPVADLPGWP 120 LFSPPKLQLQ KCTKCSREFC SSINYRRHTR VHRRTLQIEK DFLKNRDNIA AFWDRLTLDQ 180 AKTILSLADV DIEGVSGPSI LAALTTWTCK PGYASLPNAY ARAGNQLLDL IETTPSRLPV 240 SSNELFSMLD EASENTFLCT NPTASIKKFI FNGEADKVAT ELKNAVACTS YMLEQKLVEA 300 WSADKAAEAL RCQKLLVEEE EAAQKKQAEL IERKRTKKLR QKVQRLKDLK DEDAIDHLPE 360 TLDCAADSSG TLSLKATLDP GLYEQEDPQY LSLPTPVASE DNNSFVDLSV ENGIPDPGHE 420 VDSGVVLSQQ AFSRHRLGRK ENLAQNSFAS GSAIGSKHAA LARHSHYRGT NVSAVSNKTK 480 TWAWKARTEI EEHIAKDELN IDDGQDSKES PTATPASQLN IGNNPVTKMV QPISDGEDGN 540 GHTVHNDVVV NITPTEENDS SSSVMPDGSS RSSCCNEGLA EDGVLRGTMF SSKEAAAFLS 600 QRWKEAITSD HVKLVLCPDS

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MTKKPLGLLP FPSFFGKKGR IGTIAGESRR AAAAEGLGSG EFGGKREERE EEVAARERET  60
TGSPHLAILL LLLLLVRVRF ASSSLACPPQ PPGSQSRSES NPKAMPHARS SPVADLPGWP  120
LFSPPKLQLQ KCTKCSREFC SSINYRRHTR VHRRTLQIEK DFLKNRDNIA AFWDRLTLDQ  180
AKTILSLADV DIEGVSGPSI LAALTTWTCK PGYASLPNAY ARAGNQLLDL IETTPSRLPV  240
SSNELFSMLD EASENTFLCT NPTASIKKFI FNGEADKVAT ELKNAVACTS YMLEQKLVEA  300
WSADKAAEAL RCQKLLVEEE EAAQKKQAEL IERKRTKKLR QKVQRLKDLK DEDAIDHLPE  360
TLDCAADSSG TLSLKATLDP GLYEQEDPQY LSLPTPVASE DNNSFVDLSV ENGIPDPGHE  420
VDSGVVLSQQ AFSRHRLGRK ENLAQNSFAS GSAIGSKHAA LARHSHYRGT NVSAVSNKTK  480
TWAWKARTEI EEHIAKDELN IDDGQDSKES PTATPASQLN IGNNPVTKMV QPISDGEDGN  540
GHTVHNDVVV NITPTEENDS SSSVMPDGSS RSSCCNEGLA EDGVLRGTMF SSKEAAAFLS  600
QRWKEAITSD HVKLVLCPDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	338	ERKRTKKL
2	336	346	KKLRQKVQRLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G16240.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102035	0.0	AK102035.1 Oryza sativa Japonica Group cDNA clone:J033081C08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611822.1	0.0	uncharacterized protein LOC4347911
Refseq	XP_015611823.1	0.0	uncharacterized protein LOC4347911
TrEMBL	A0A0D9XH17	0.0	A0A0D9XH17_9ORYZ; Uncharacterized protein
STRING	LPERR09G16240.2	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	3e-73	C2H2-like zinc finger protein