PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G15030.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 501aa MW: 52716.8 Da PI: 9.2796

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G15030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H LPERR09G15030.1 66 FVCEVCNKGFQREQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	12.6	0.0004	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k++ +s+ k H +t+ LPERR09G15030.1 142 WRCDKCSKRYAVQSDWKAHSKTC 164 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.04E-7	65	88	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.7E-6	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0041	66	88	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.2E-5	66	88	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	11.094	66	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-4	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.04E-7	137	162	No hit	No description
SMART	SM00355	150	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MAATSSASLF GLADTQMPPP PPQNPNNPPA PAPAPPKKKR NQPGNPNPDA EVIALSPRTL 60 MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPK ESRRRVYLCP EVSCVHHDPS 120 RALGDLTGIK KHYCRKHGEK KWRCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAQENARM PPIDTGVYGG VGNMSLSLTD ATMAAPQLTG AGIFPDQHQA 240 SSAQPMASSG NVLRLGGSSN SSVGGGASQF DQIMASSSPG ASMFRSQGSS SSSYYLTNAA 300 HSEFPEVDGQ ITPAVSHGGG SLLHGKPASF HDQLMQFPTV QHHHHQQNSN GNNNNLLNLS 360 FLSGNNTNNA AAGAAGNGTI VTTGGGLAGG FQSMYNSSES GGGGLPQMSA TALLQKAAQM 420 GATTSSYSAG AASERQYQNI IMGSMASGGA CFADGFSLDT GKLSTRDFLA GVSGAGSSAM 480 APPRHGVAGL HVGSLDPANM N

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MAATSSASLF GLADTQMPPP PPQNPNNPPA PAPAPPKKKR NQPGNPNPDA EVIALSPRTL  60
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPK ESRRRVYLCP EVSCVHHDPS  120
RALGDLTGIK KHYCRKHGEK KWRCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAQENARM PPIDTGVYGG VGNMSLSLTD ATMAAPQLTG AGIFPDQHQA  240
SSAQPMASSG NVLRLGGSSN SSVGGGASQF DQIMASSSPG ASMFRSQGSS SSSYYLTNAA  300
HSEFPEVDGQ ITPAVSHGGG SLLHGKPASF HDQLMQFPTV QHHHHQQNSN GNNNNLLNLS  360
FLSGNNTNNA AAGAAGNGTI VTTGGGLAGG FQSMYNSSES GGGGLPQMSA TALLQKAAQM  420
GATTSSYSAG AASERQYQNI IMGSMASGGA CFADGFSLDT GKLSTRDFLA GVSGAGSSAM  480
APPRHGVAGL HVGSLDPANM N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-35	138	200	3	65	Zinc finger protein JACKDAW
5b3h_F	6e-35	138	200	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G15030.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101181	0.0	AK101181.1 Oryza sativa Japonica Group cDNA clone:J033029F02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660959.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8GYC1	1e-117	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A0D9XGK9	0.0	A0A0D9XGK9_9ORYZ; Uncharacterized protein
STRING	LPERR09G15030.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.2	1e-106	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]