PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 365aa MW: 40281.3 Da PI: 4.6252

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G14740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.3	3.5e-54	115	246	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v LPERR09G14740.1 115 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRV 207 79**************************.99**********84335556888******************************** PP NAM 93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ +g+++g+kktLv+y+grap+g++tdWvmheyrl LPERR09G14740.1 208 VSQqqhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 246 87777778***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-64	109	269	IPR003441	NAC domain
PROSITE profile	PS51005	60.773	115	269	IPR003441	NAC domain
Pfam	PF02365	1.6E-29	116	246	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MEKVQASCEG EGIYKREAKG VHPIDQNLVG GMTMSTGVPT VTVPPTPAVA DANNLLIRVL 60 AAAVWKGRGN AEEEAKFLWA QPPAPVVEEE EAAGQLQTPP PPPLLLSSLM APVGLPPGFR 120 FHPTDEELVN YYLKRKIHGL KIELDIIPEV DLYKCEPWEL AEKSFLPSRD PEWYFFGPRD 180 RKYPNGFRTN RATRAGYWKS TGKDRRVVSQ QQHGGRAIGM KKTLVYYRGR APQGVRTDWV 240 MHEYRLDDKD CEDTIPIQDT YALCRVFKKN AICNEVEELQ GQCSMALLEG ACQQLLATSG 300 GSQVEQYETP SPPEVAVGST SGGADAEEDP EKDESWMQFI SDDAWYASNA GDGGEESTSC 360 VAIAG

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MEKVQASCEG EGIYKREAKG VHPIDQNLVG GMTMSTGVPT VTVPPTPAVA DANNLLIRVL  60
AAAVWKGRGN AEEEAKFLWA QPPAPVVEEE EAAGQLQTPP PPPLLLSSLM APVGLPPGFR  120
FHPTDEELVN YYLKRKIHGL KIELDIIPEV DLYKCEPWEL AEKSFLPSRD PEWYFFGPRD  180
RKYPNGFRTN RATRAGYWKS TGKDRRVVSQ QQHGGRAIGM KKTLVYYRGR APQGVRTDWV  240
MHEYRLDDKD CEDTIPIQDT YALCRVFKKN AICNEVEELQ GQCSMALLEG ACQQLLATSG  300
GSQVEQYETP SPPEVAVGST SGGADAEEDP EKDESWMQFI SDDAWYASNA GDGGEESTSC  360
VAIAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-51	111	278	11	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G14740.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612702.2	0.0	NAC domain-containing protein 86
Swissprot	A4VCM0	1e-83	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A0D9XGG6	0.0	A0A0D9XGG6_9ORYZ; Uncharacterized protein
STRING	LPERR09G14740.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3713	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-122	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]