 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR09G14720.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
NAC |
| Protein Properties |
Length: 217aa MW: 25041.1 Da PI: 7.7774 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR09G14720.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 175.3 | 1.8e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ePw+L k + ++++ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v
LPERR09G14720.1 6 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKCEPWELAeKsFLPSKDSEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRRV 98
79****************************.99**************84335566899************************************ PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +g+kktLv+ykgrap+g +t+Wvmheyr+
LPERR09G14720.1 99 NY-QSRSIGMKKTLVYYKGRAPQGIRTSWVMHEYRI 133
*9.9999***************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MAPVGLPPGF RFHPTDEELV NYYLKRKVHG LSIELDIIPE VDLYKCEPWE LAEKSFLPSK 60
DSEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRRVNY QSRSIGMKKT LVYYKGRAPQ 120
GIRTSWVMHE YRIEESECEN AMGVQDSYAL CRIFKKNVVL GEFDKQGECS SSQAKGNQEQ 180
VTDFGDAGQS SGANENDKDN SWMQFIADDL WCTNKLK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-55 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-55 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-55 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-55 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-55 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 2e-55 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 2e-55 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 2e-55 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 2e-55 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 2e-55 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 2e-55 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 2e-55 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 2e-55 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 2e-55 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC137596 | 1e-129 | AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence. |
| GenBank | AP005564 | 1e-129 | AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence. |
| GenBank | AP014965 | 1e-129 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 1e-129 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
