PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HD-ZIP

Protein Properties

Length: 258aa MW: 28620.9 Da PI: 5.0926

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G13180.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	1.9e-19	32	84	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k LPERR09G13180.1 32 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 84 456*************************************************9 PP
2	HD-ZIP_I/II	120.6	8e-39	31	119	2	90
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ yd+l + e+L+ke+ +L ++ LPERR09G13180.1 31 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDSLLCSYESLKKEKLALIKQ 119 8**********************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.55E-19	12	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.973	26	86	IPR001356	Homeobox domain
SMART	SM00389	6.9E-16	29	90	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	30	93	IPR009057	Homeodomain-like
CDD	cd00086	7.68E-17	31	87	No hit	No description
Pfam	PF00046	8.4E-17	32	84	IPR001356	Homeobox domain
PRINTS	PR00031	8.7E-6	57	66	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	61	84	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.7E-6	66	82	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.0E-10	86	119	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDQGDEDNEW MMMEMPGGGG KGGKGGGGVD RKKRFSEEQI KSLESMFATQ TKLEPRQKLQ 60 LARELGLQPR QVAIWFQNKR ARWKSKQLER EYSALRDDYD SLLCSYESLK KEKLALIKQA 120 SHKKMYLFLI ATFLLEKLAE MLQEEPRGKY GDNAAGAEDD VHSGGGVGMK EEFVDAGGGG 180 ATLYTAEGGR TTAAANKLMP QFGSDDVDAG LFLRPSSHAT ASFTASEPAD HQSFNFNSSW 240 PSSTEQTCSS SQWWEFES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	27	GGKGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G13180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005681	1e-113	AP005681.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1439_F07.
GenBank	AP014965	1e-113	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-113	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612316.1	1e-116	homeobox-leucine zipper protein HOX6
Swissprot	Q651Z5	1e-117	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	1e-117	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A0D9XFX0	0.0	A0A0D9XFX0_9ORYZ; Uncharacterized protein
STRING	LPERR09G13180.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-41	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]