PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HSF

Protein Properties

Length: 435aa MW: 46209.4 Da PI: 8.2319

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G13100.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.1	1.9e-35	49	139	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k+ll+ LPERR09G13100.1 49 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANECFRRGEKRLLC 133 9***************************************************************99.........************* PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+r+k LPERR09G13100.1 134 DIHRRK 139 **98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.1E-38	41	133	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.3E-59	45	138	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.97E-35	46	138	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	6.6E-32	49	138	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-20	49	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-20	87	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	88	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-20	100	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MCPIASLAFS HLEATVYRLP LPSLSLRARF RPPVAAEALA GQRSLPTPFL TKTYQLVDDP 60 AVDDVISWNE DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA 120 NECFRRGEKR LLCDIHRRKV VAAAPAPVSP TAGMAMASGA VTVAAAPIPM ALPVTRPGSP 180 AHSSEEQVLS SNSGSGEEHR QASGSGSAPG VVGGGGSASG DMGEENERLR RENARLTREL 240 GNMKKLCNNI FLLMSNQQQL LRRVVGGNPP SAASPPRDSR PNALLPRSSA SLSASSGRET 300 TPPSPSPTKT VASPARIRRX GLAIDVEPDP SARLFGVSIG LKRTRDDAAV AVADEDGGLA 360 GEDQEENGAD VKPEPADPHH GGGGGGDGGG GSSKEASPDQ HPWPIYRPTP MYHSLRPSCN 420 GPDRAGSDQD GSSSR

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MCPIASLAFS HLEATVYRLP LPSLSLRARF RPPVAAEALA GQRSLPTPFL TKTYQLVDDP  60
AVDDVISWNE DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA  120
NECFRRGEKR LLCDIHRRKV VAAAPAPVSP TAGMAMASGA VTVAAAPIPM ALPVTRPGSP  180
AHSSEEQVLS SNSGSGEEHR QASGSGSAPG VVGGGGSASG DMGEENERLR RENARLTREL  240
GNMKKLCNNI FLLMSNQQQL LRRVVGGNPP SAASPPRDSR PNALLPRSSA SLSASSGRET  300
TPPSPSPTKT VASPARIRRX GLAIDVEPDP SARLFGVSIG LKRTRDDAAV AVADEDGGLA  360
GEDQEENGAD VKPEPADPHH GGGGGGDGGG GSSKEASPDQ HPWPIYRPTP MYHSLRPSCN  420
GPDRAGSDQD GSSSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	7e-26	39	138	11	120	Heat shock factor protein 1
5hdg_A	5e-26	49	138	10	110	Heat shock factor protein 1
5hdn_A	5e-26	49	138	10	110	Heat shock factor protein 1
5hdn_B	5e-26	49	138	10	110	Heat shock factor protein 1
5hdn_C	5e-26	49	138	10	110	Heat shock factor protein 1
5hdn_D	5e-26	49	138	10	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00432	DAP	Transfer from AT4G11660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G13100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106525	0.0	AK106525.1 Oryza sativa Japonica Group cDNA clone:002-107-D11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876145.1	1e-158	heat stress transcription factor B-2c isoform X1
Refseq	XP_025876147.1	1e-158	heat stress transcription factor B-2c isoform X5
Swissprot	Q652B0	1e-151	HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBL	A0A0D9XFV6	0.0	A0A0D9XFV6_9ORYZ; Uncharacterized protein
STRING	LPERR09G13100.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	5e-58	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Rerksiri W,Zhang X,Xiong H,Chen X Expression and promoter analysis of six heat stress-inducible genes in rice. ScientificWorldJournal, 2013. 2013: p. 397401 [PMID:24459431]