PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G13100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 435aa    MW: 46209.4 Da    PI: 8.2319
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G13100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.9e-35491392101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll+
  LPERR09G13100.1  49 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANECFRRGEKRLLC 133
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  LPERR09G13100.1 134 DIHRRK 139
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3841133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-5945138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.97E-3546138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.6E-3249138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-204972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-20100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MCPIASLAFS HLEATVYRLP LPSLSLRARF RPPVAAEALA GQRSLPTPFL TKTYQLVDDP  60
AVDDVISWNE DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA  120
NECFRRGEKR LLCDIHRRKV VAAAPAPVSP TAGMAMASGA VTVAAAPIPM ALPVTRPGSP  180
AHSSEEQVLS SNSGSGEEHR QASGSGSAPG VVGGGGSASG DMGEENERLR RENARLTREL  240
GNMKKLCNNI FLLMSNQQQL LRRVVGGNPP SAASPPRDSR PNALLPRSSA SLSASSGRET  300
TPPSPSPTKT VASPARIRRX GLAIDVEPDP SARLFGVSIG LKRTRDDAAV AVADEDGGLA  360
GEDQEENGAD VKPEPADPHH GGGGGGDGGG GSSKEASPDQ HPWPIYRPTP MYHSLRPSCN  420
GPDRAGSDQD GSSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-263913811120Heat shock factor protein 1
5hdg_A5e-264913810110Heat shock factor protein 1
5hdn_A5e-264913810110Heat shock factor protein 1
5hdn_B5e-264913810110Heat shock factor protein 1
5hdn_C5e-264913810110Heat shock factor protein 1
5hdn_D5e-264913810110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G13100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1065250.0AK106525.1 Oryza sativa Japonica Group cDNA clone:002-107-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876145.11e-158heat stress transcription factor B-2c isoform X1
RefseqXP_025876147.11e-158heat stress transcription factor B-2c isoform X5
SwissprotQ652B01e-151HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A0D9XFV60.0A0A0D9XFV6_9ORYZ; Uncharacterized protein
STRINGLPERR09G13100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-58HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]