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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
LPERR09G12890.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
TCP |
| Protein Properties |
Length: 370aa MW: 38188.8 Da PI: 6.1866 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR09G12890.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 106.4 | 4.6e-33 | 102 | 197 | 5 | 89 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg... 88
r+ ++h kv+gR+RR+R++++caar+ +L++eLG+++d++ti WL+qq++pai+++tgt++ +a ++ ++++s++
LPERR09G12890.1 102 PPRNRDRHIKVEGRGRRIRMPVKCAARVAQLTRELGHKSDGETIRWLMQQSEPAIIAATGTGTVPAIATtvdgvlrL------PTQSPSAAgga 189
5799*********************************************************8888854442222221......22222222222 PP
TCP 89 .......k 89
LPERR09G12890.1 190 qsghvveP 197
22234432 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MDSQLQDKAA DEEAAVGNAA ALAGLGGYPS NQSPFMEPPL PEKADEEEMA ATAGDAADFG 60
RMGFAPIRSP PPPSAAELVP KAEPVAAAAM ELLQGMAVAK PPPRNRDRHI KVEGRGRRIR 120
MPVKCAARVA QLTRELGHKS DGETIRWLMQ QSEPAIIAAT GTGTVPAIAT TVDGVLRLPT 180
QSPSAAGGAQ SGHVVEPPAP KRRRKLQPTR AGAAPLALAP PTHAAAVYYP VVADPLLQAN 240
GGGVISISSG LAPISSTAAA VPFMAMPPGH SNGKQVMSPA TVWMVPPGAG AGAAAISQPM 300
HYWAFQTNHH DPAANFAGGS NFQHQTFHNA VAGGGEESQS QHHGGHKVNA DEPAGEENEY 360
EGMTDSSSDE
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
