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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
LPERR09G10700.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
C2H2 |
| Protein Properties |
Length: 399aa MW: 42494.4 Da PI: 8.1394 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR09G10700.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.9 | 3.6e-05 | 233 | 252 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
LPERR09G10700.1 233 FSCPVCFKTFNRYNNMQMHM 252
89*****************9 PP
|
| 2 | zf-C2H2 | 12.6 | 0.00041 | 319 | 339 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C +Cgk F k + ++H +++
LPERR09G10700.1 319 CRKCGKAFAVKGDWRTHEKNC 339
*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MENPYYTSFL KNHHRRYCFT SSPSPSSPAA AAAGAYSSLP FFPPTAPPTP TAPPSPPLRE 60
ALPLLSLTPA SRGPSRRPAD YADDDGEEAG TASGCGDRHH RRRRREGRLV FADLNVDVEE 120
GGGGDSASGS AAAAEGDVTV ALHIGLPSPT SGGGGAAADL ISGISASSSS AAAGRRTAAA 180
REAEVEDDED IGLDGEGEAA APLGFASTTM GRLNKGQYWI PTPSQILIGP TQFSCPVCFK 240
TFNRYNNMQM HMWGHGSQYR KGPESLRGIQ PTAMLRLPCY CCAAGCRNNI DHPRAKPLKD 300
FRTLQTHYKR KHGLKPFLCR KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH 360
ARAFGHGHGA IGGAGLDEDD DGAVSDLDHD TSSAAARSL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF626940 | 0.0 | EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds. |
