PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G10700.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 399aa MW: 42494.4 Da PI: 8.1394

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G10700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	233	252	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ LPERR09G10700.1 233 FSCPVCFKTFNRYNNMQMHM 252 89*****************9 PP
2	zf-C2H2	12.6	0.00041	319	339	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ LPERR09G10700.1 319 CRKCGKAFAVKGDWRTHEKNC 339 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.9E-6	233	252	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.38	233	255	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.64	233	260	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	235	255	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.61E-6	299	337	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-5	304	337	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	317	337	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	317	337	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	343	366	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MENPYYTSFL KNHHRRYCFT SSPSPSSPAA AAAGAYSSLP FFPPTAPPTP TAPPSPPLRE 60 ALPLLSLTPA SRGPSRRPAD YADDDGEEAG TASGCGDRHH RRRRREGRLV FADLNVDVEE 120 GGGGDSASGS AAAAEGDVTV ALHIGLPSPT SGGGGAAADL ISGISASSSS AAAGRRTAAA 180 REAEVEDDED IGLDGEGEAA APLGFASTTM GRLNKGQYWI PTPSQILIGP TQFSCPVCFK 240 TFNRYNNMQM HMWGHGSQYR KGPESLRGIQ PTAMLRLPCY CCAAGCRNNI DHPRAKPLKD 300 FRTLQTHYKR KHGLKPFLCR KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH 360 ARAFGHGHGA IGGAGLDEDD DGAVSDLDHD TSSAAARSL

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MENPYYTSFL KNHHRRYCFT SSPSPSSPAA AAAGAYSSLP FFPPTAPPTP TAPPSPPLRE  60
ALPLLSLTPA SRGPSRRPAD YADDDGEEAG TASGCGDRHH RRRRREGRLV FADLNVDVEE  120
GGGGDSASGS AAAAEGDVTV ALHIGLPSPT SGGGGAAADL ISGISASSSS AAAGRRTAAA  180
REAEVEDDED IGLDGEGEAA APLGFASTTM GRLNKGQYWI PTPSQILIGP TQFSCPVCFK  240
TFNRYNNMQM HMWGHGSQYR KGPESLRGIQ PTAMLRLPCY CCAAGCRNNI DHPRAKPLKD  300
FRTLQTHYKR KHGLKPFLCR KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH  360
ARAFGHGHGA IGGAGLDEDD DGAVSDLDHD TSSAAARSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G10700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF626940	0.0	EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611033.1	1e-162	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-124	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D9XF14	0.0	A0A0D9XF14_9ORYZ; Uncharacterized protein
STRING	LPERR09G10700.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-107	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]