PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G10410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 751aa    MW: 81509.8 Da    PI: 6.2866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G10410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.1e-31338394259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK+vk+se+prsYY+Ct+++C+v+kkve+++ d+++++i+Y+g+Hnh+
  LPERR09G10410.1 338 EDGYSWRKYGQKQVKNSENPRSYYKCTQPNCNVRKKVEHAQ-DGQITQIIYKGTHNHP 394
                      8**************************************99.***************8 PP
2WRKY103.89.3e-33552610159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  LPERR09G10410.1 552 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHE 610
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-29330396IPR003657WRKY domain
PROSITE profilePS5081123.204332396IPR003657WRKY domain
SuperFamilySSF1182904.32E-25336396IPR003657WRKY domain
SMARTSM007741.8E-34337395IPR003657WRKY domain
PfamPF031062.1E-24338394IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-37537612IPR003657WRKY domain
SuperFamilySSF1182907.32E-29544612IPR003657WRKY domain
PROSITE profilePS5081137.883547612IPR003657WRKY domain
SMARTSM007743.3E-38552611IPR003657WRKY domain
PfamPF031063.1E-25553610IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MEVESGLMSY CANTWSVSDS DGIVVLSHLL FVALVFRFWE EKKDQSFSSD GPAHLSSDHG  60
SLMEDWMPPP TPSPRTLMSS FLNDDIVTGS FANFFNDHES NKPQDQFERS RELVDSSKEV  120
NSQSARPAFQ RDASLEPSLL NPTQRSNSHS GLAERRAARA GFSVPKIDTS RAGSSTVIRS  180
PVSIPPGLSP TALLESPVFL YNAMAQPSPT TGKLPFLMAS NAKSTIPSAT KMDEDCTFGN  240
DTFSFQPHVG SRLQNFSAAE KGLNACNQNQ SLSKIHQQES SLQSSFTAVK DTTAEKNVKT  300
RTSDSMFGDN HSSSDEQEDD ETNQNGEYSS AAMGSPAEDG YSWRKYGQKQ VKNSENPRSY  360
YKCTQPNCNV RKKVEHAQDG QITQIIYKGT HNHPMPPSNH RSDVSLSHTN DPEVNVLQNH  420
GSQTGLNSAS LWNNAKNDCL QDVQSGVMET TPAACLPMST NCDTSIMESQ DAVDVSSTQS  480
NEEDDRATHG TASIECNGDG DETDSKRRKL DALTAATAAI TTTSNTDMGA AASRGVREPR  540
VVVQTTSEVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTH QGCSVRKHVE RASHDLKSVI  600
TTYEGKHNHE VPAARNSGHG GSGSGNAPSA PQANSSQRRQ EPAQASFGQF GGVAPFSSFG  660
LPPRNQFGPA ASNFPFGMVP PGMAIPMPPL GPLAPTKMVG HPSNMQGYQG LMMSEGEMKT  720
EPVSQSGFPA VTQSSSPFQQ MMNRRPFGPQ M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-36338613878Probable WRKY transcription factor 4
2lex_A6e-36338613878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G10410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0650780.0AK065078.1 Oryza sativa Japonica Group cDNA clone:J013001K23, full insert sequence.
GenBankAK1037450.0AK103745.1 Oryza sativa Japonica Group cDNA clone:J033138N11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696825.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
TrEMBLA0A0D9XEY20.0A0A0D9XEY2_9ORYZ; Uncharacterized protein
STRINGLPERR09G10410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-114WRKY DNA-binding protein 2