PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G10080.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 609aa MW: 65604.6 Da PI: 9.968 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.2 | 1.2e-17 | 333 | 382 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq LPERR09G10080.5 333 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 382 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-23 | 328 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.9E-19 | 329 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.78 | 331 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.81E-15 | 333 | 386 | No hit | No description |
Pfam | PF00010 | 4.5E-15 | 333 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-13 | 337 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MRQYGAASHA RAHVRRAGSS YRAAAGRGRR RSQTKQRKAK EKRIVLLREE EDEEEEDRCI 60 DLSSLAILRA NSAISRSIVS SWTRHDCSGE RSRRGGGETV RVIIGRRATI MGIQGKKATT 120 REHDFLSLYT AAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPSPSP APSPAASQQQ 180 HHQTFSISHV AGARPVAAAA AAVVKAEPTT SSSSPFVLWG QPTAAHPVAA LGHHHHHHHQ 240 WTLPFAGVGQ VAAAAAAAPR NHQPPQERKG RVGGGGLMDS GSRSSGGAGF DDDDGLAARR 300 EVSSSLKELT VRVDGKGGSC SGSGTDQRPN TPRSKHSATE QRRRSKINDR FQILRELLPH 360 SDQKRDKATF LLEVIEYIRF LQEKVQKHET SVPEWNQENA KILPWSKGQI PGDDLPDPSQ 420 FIRNGSSSGF NFTGKPDDNH AMVTSAAASG AQEQVETDHT ASVSYRSAET PTNITNNVTS 480 QAQAQAQAQW ASPSGVDDSA MNSEMLNNQQ LAIDEGTISL SSQYSQQLLG SLTHALESSG 540 VDLSQASISV QINLGKRAVK RSGADGSSSS KELPNPSVNN ENMGHQLAML GGGVEDLPQL 600 TKRHKSGNS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 42 | QRKAKEKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G10080.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071315 | 0.0 | AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence. | |||
GenBank | EU837261 | 0.0 | EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612524.1 | 0.0 | transcription factor BIM3 isoform X1 | ||||
TrEMBL | A0A0D9XET5 | 0.0 | A0A0D9XET5_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI09G14830.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 3e-46 | BES1-interacting Myc-like protein 2 |