PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G10080.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 622aa    MW: 67263.4 Da    PI: 10.0827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G10080.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.3e-17333382255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  LPERR09G10080.3 333 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 382
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-23328402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-19329399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78331381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-15333386No hitNo description
PfamPF000104.6E-15333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MRQYGAASHA RAHVRRAGSS YRAAAGRGRR RSQTKQRKAK EKRIVLLREE EDEEEEDRCI  60
DLSSLAILRA NSAISRSIVS SWTRHDCSGE RSRRGGGETV RVIIGRRATI MGIQGKKATT  120
REHDFLSLYT AAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPSPSP APSPAASQQQ  180
HHQTFSISHV AGARPVAAAA AAVVKAEPTT SSSSPFVLWG QPTAAHPVAA LGHHHHHHHQ  240
WTLPFAGVGQ VAAAAAAAPR NHQPPQERKG RVGGGGLMDS GSRSSGGAGF DDDDGLAARR  300
EVSSSLKELT VRVDGKGGSC SGSGTDQRPN TPRSKHSATE QRRRSKINDR FQILRELLPH  360
SDQKRDKATF LLEVIEYIRF LQEKVQKHET SVPEWNQENA KILPWSNIYF RSFWKNSQSK  420
GQIPGDDLPD PSQFIRNGSS SGFNFTGKPD DNHAMVTSAA ASGAQEQVET DHTASVSYRS  480
AETPTNITNN VTSQAQAQAQ AQWASPSGVD DSAMNSEMLN NQQLAIDEGT ISLSSQYSQQ  540
LLGSLTHALE SSGVDLSQAS ISVQINLGKR AVKRSGADGS SSSKELPNPS VNNENMGHQL  600
AMLGGGVEDL PQLTKRHKSG NS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542QRKAKEKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G10080.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713150.0AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence.
GenBankEU8372610.0EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612524.10.0transcription factor BIM3 isoform X1
TrEMBLA0A0D9XET40.0A0A0D9XET4_9ORYZ; Uncharacterized protein
STRINGORGLA06G0286200.10.0(Oryza glaberrima)
STRINGORGLA09G0105800.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-46BES1-interacting Myc-like protein 2