PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G10080.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 1217aa MW: 133227 Da PI: 8.9083 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.1 | 2.8e-17 | 928 | 977 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq LPERR09G10080.2 928 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 977 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51375 | 7.563 | 450 | 480 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.11 | 455 | 481 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 9.799 | 481 | 515 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.029 | 483 | 512 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 2.4E-9 | 584 | 633 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.016 | 584 | 620 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 2.4E-5 | 587 | 612 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.215 | 621 | 655 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.125 | 656 | 686 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 2.4E-11 | 689 | 735 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.641 | 689 | 723 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.4E-6 | 691 | 724 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.366 | 724 | 759 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.974 | 760 | 790 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.048 | 828 | 862 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:4.10.280.10 | 3.5E-23 | 923 | 997 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-18 | 924 | 994 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.78 | 926 | 976 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-14 | 928 | 977 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.25E-15 | 928 | 981 | No hit | No description |
SMART | SM00353 | 2.6E-13 | 932 | 982 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1217 aa Download sequence Send to blast |
MRQYGAASHA RAHVRRAGSS YRAAAGRGRR RSQTKQRKAK EKRIVLLREE EDEEEEDRCI 60 DLSSLAILRA NSAISRSIVS SWTRHDCSGE RSRRGGGETV RVIIGRRATI MGIQGKKATT 120 REHDFLSLYT AAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPSPSP APSPAASQQQ 180 HHQTFSISHV AGARPVAAAA AAVVKAEPTT SSSSPFVLWG QPTAAHPVAA LGHHHHHHHQ 240 WTLPFAGVGQ VAAAAAAAPR NHQPPQERKG RVGGGGLMDS GSRSSGGAGF DDDDGLAARR 300 EVSSSLKEGR RKPHEPMEME ICSRCALPSH IHQLHARLLV SGRLGRGSPS LALALLRAAC 360 RVRASPCLRP LARHVLDEIP RPHPHFLHAA ARLASRLRMP SLALRHYVAL RTHHPAFLPP 420 APAIADVLKS VRGRAAHAHA LRVAAHTGDN RFLQNTLISM YFACGDARRA RLVFEGMRDR 480 DVVSWTSLVS GLVQNGCPLQ GLQQFSAMMR CDIRPDFVVL VTIVKAFMEL YDLPGAESAH 540 SLVVKGGFHD EQDVLITLTA MYASFGCLVA AKALFDMVPP QQVNVILWNA MISGYSKNGF 600 AHEALNLFKH MQMVARNVAP DSITLRSVIF ACAQLGSTEL AAWMEDYVRR SEYREDVLVN 660 TALIDMYAKS GSIAHARAVF EWMHVDDRDV VVWSALITGY GVQGLINEAC TLFEDMKLAG 720 VRPNDVTFLG LLSACNHAGA VEKGWSYFHS MKPDYGIEPQ HQHYACVVDL LSRAGQLDRA 780 YQFILNMPIK PEMTVWGALL HGCKMHGHSN MAMAECAAQH IFQLEQSNSG HYVQLANMYA 840 SAGMWSQVAG MRITMREKGV TKTTGCSSIE VDGEMHSFHA WDHSHPRATE IFALLCLLSP 900 TPDLTVRVDG KGGSCSGSGT DQRPNTPRSK HSATEQRRRS KINDRFQILR ELLPHSDQKR 960 DKATFLLEVI EYIRFLQEKV QKHETSVPEW NQENAKILPW SNIYFRSFWK NSQSKGQIPG 1020 DDLPDPSQFI RNGSSSGFNF TGKPDDNHAM VTSAAASGAQ EQVETDHTAS VSYRSAETPT 1080 NITNNVTSQA QAQAQAQWAS PSGVDDSAMN SEMLNNQQLA IDEGTISLSS QYSQQLLGSL 1140 THALESSGVD LSQASISVQI NLGKRAVKRS GADGSSSSKE LPNPSVNNEN MGHQLAMLGG 1200 GVEDLPQLTK RHKSGNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5iww_D | 6e-51 | 433 | 804 | 17 | 330 | PLS9-PPR |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 42 | QRKAKEKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G10080.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101896 | 0.0 | AK101896.1 Oryza sativa Japonica Group cDNA clone:J033070P13, full insert sequence. | |||
GenBank | AP005759 | 0.0 | AP005759.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0556A05. | |||
GenBank | AP006169 | 0.0 | AP006169.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699577.1 | 0.0 | pentatricopeptide repeat-containing protein At3g12770 | ||||
TrEMBL | A0A0D9XET2 | 0.0 | A0A0D9XET2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G10080.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 5e-45 | BES1-interacting Myc-like protein 2 |