PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G10080.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 1217aa    MW: 133227 Da    PI: 8.9083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G10080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.12.8e-17928977255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  LPERR09G10080.1 928 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 977
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513757.563450480IPR002885Pentatricopeptide repeat
PfamPF015350.11455481IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.799481515IPR002885Pentatricopeptide repeat
PfamPF015350.029483512IPR002885Pentatricopeptide repeat
PfamPF130412.4E-9584633IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.016584620IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.4E-5587612IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.215621655IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.125656686IPR002885Pentatricopeptide repeat
PfamPF130412.4E-11689735IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.641689723IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.4E-6691724IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.366724759IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.974760790IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.048828862IPR002885Pentatricopeptide repeat
Gene3DG3DSA:4.10.280.103.5E-23923997IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-18924994IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78926976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-14928977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.25E-15928981No hitNo description
SMARTSM003532.6E-13932982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1217 aa     Download sequence    Send to blast
MRQYGAASHA RAHVRRAGSS YRAAAGRGRR RSQTKQRKAK EKRIVLLREE EDEEEEDRCI  60
DLSSLAILRA NSAISRSIVS SWTRHDCSGE RSRRGGGETV RVIIGRRATI MGIQGKKATT  120
REHDFLSLYT AAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPSPSP APSPAASQQQ  180
HHQTFSISHV AGARPVAAAA AAVVKAEPTT SSSSPFVLWG QPTAAHPVAA LGHHHHHHHQ  240
WTLPFAGVGQ VAAAAAAAPR NHQPPQERKG RVGGGGLMDS GSRSSGGAGF DDDDGLAARR  300
EVSSSLKEGR RKPHEPMEME ICSRCALPSH IHQLHARLLV SGRLGRGSPS LALALLRAAC  360
RVRASPCLRP LARHVLDEIP RPHPHFLHAA ARLASRLRMP SLALRHYVAL RTHHPAFLPP  420
APAIADVLKS VRGRAAHAHA LRVAAHTGDN RFLQNTLISM YFACGDARRA RLVFEGMRDR  480
DVVSWTSLVS GLVQNGCPLQ GLQQFSAMMR CDIRPDFVVL VTIVKAFMEL YDLPGAESAH  540
SLVVKGGFHD EQDVLITLTA MYASFGCLVA AKALFDMVPP QQVNVILWNA MISGYSKNGF  600
AHEALNLFKH MQMVARNVAP DSITLRSVIF ACAQLGSTEL AAWMEDYVRR SEYREDVLVN  660
TALIDMYAKS GSIAHARAVF EWMHVDDRDV VVWSALITGY GVQGLINEAC TLFEDMKLAG  720
VRPNDVTFLG LLSACNHAGA VEKGWSYFHS MKPDYGIEPQ HQHYACVVDL LSRAGQLDRA  780
YQFILNMPIK PEMTVWGALL HGCKMHGHSN MAMAECAAQH IFQLEQSNSG HYVQLANMYA  840
SAGMWSQVAG MRITMREKGV TKTTGCSSIE VDGEMHSFHA WDHSHPRATE IFALLCLLSP  900
TPDLTVRVDG KGGSCSGSGT DQRPNTPRSK HSATEQRRRS KINDRFQILR ELLPHSDQKR  960
DKATFLLEVI EYIRFLQEKV QKHETSVPEW NQENAKILPW SNIYFRSFWK NSQSKGQIPG  1020
DDLPDPSQFI RNGSSSGFNF TGKPDDNHAM VTSAAASGAQ EQVETDHTAS VSYRSAETPT  1080
NITNNVTSQA QAQAQAQWAS PSGVDDSAMN SEMLNNQQLA IDEGTISLSS QYSQQLLGSL  1140
THALESSGVD LSQASISVQI NLGKRAVKRS GADGSSSSKE LPNPSVNNEN MGHQLAMLGG  1200
GVEDLPQLTK RHKSGNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D6e-5143380417330PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542QRKAKEKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G10080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018960.0AK101896.1 Oryza sativa Japonica Group cDNA clone:J033070P13, full insert sequence.
GenBankAP0057590.0AP005759.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0556A05.
GenBankAP0061690.0AP006169.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699577.10.0pentatricopeptide repeat-containing protein At3g12770
TrEMBLA0A0D9XET20.0A0A0D9XET2_9ORYZ; Uncharacterized protein
STRINGLPERR09G10080.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-45BES1-interacting Myc-like protein 2