PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G09700.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 342aa MW: 36439.1 Da PI: 5.7086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G09700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.5e-13	126	177	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P++ ++++ + a+i+ A++++k+L+ LPERR09G09700.1 126 QRMTHIAVERNRRKQMNDYLAVLRGLMPPS---YAQRGDQASIVGGAINFVKELE 177 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.57E-13	124	181	No hit	No description
SuperFamily	SSF47459	8.24E-17	125	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.428	125	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-13	126	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-11	126	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-9	131	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MALEAVLLSR RGDLFGLGGR CAMEGGGIGS GDGAAWSNPF ISGFEGVMDL DGGNWDAAAC 60 SSMLLHGFQE LEIPAAAVQP PPGEPEPAGR VGGGGQEDQA GTAAQAGRRK RRRARAVKNK 120 EEVESQRMTH IAVERNRRKQ MNDYLAVLRG LMPPSYAQRG DQASIVGGAI NFVKELEQLL 180 QSLEARKSSR QCAAGDAASP PFASFFTFPQ YSMSAAAAIP ATAPVVNDAD RRDDGGAGAE 240 AEVWGSKPSA VADVEVTMVE SHANLRVLSR RRPRQLLRLV VALQGQRLTV LHLNMTSAGH 300 MVLYSFSLKV EDGCQLTSVD EIATAAHQII EQIQEEQGCS LD

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MALEAVLLSR RGDLFGLGGR CAMEGGGIGS GDGAAWSNPF ISGFEGVMDL DGGNWDAAAC  60
SSMLLHGFQE LEIPAAAVQP PPGEPEPAGR VGGGGQEDQA GTAAQAGRRK RRRARAVKNK  120
EEVESQRMTH IAVERNRRKQ MNDYLAVLRG LMPPSYAQRG DQASIVGGAI NFVKELEQLL  180
QSLEARKSSR QCAAGDAASP PFASFFTFPQ YSMSAAAAIP ATAPVVNDAD RRDDGGAGAE  240
AEVWGSKPSA VADVEVTMVE SHANLRVLSR RRPRQLLRLV VALQGQRLTV LHLNMTSAGH  300
MVLYSFSLKV EDGCQLTSVD EIATAAHQII EQIQEEQGCS LD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	112	RKRRR
2	126	137	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G09700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005399	1e-158	AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02.
GenBank	AP005574	1e-158	AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08.
GenBank	AP014965	1e-158	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-158	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660722.1	1e-147	PREDICTED: transcription factor bHLH94-like
Refseq	XP_015612232.1	1e-147	transcription factor bHLH94
Refseq	XP_015612233.1	1e-147	transcription factor bHLH94
Swissprot	Q9SK91	9e-75	BH094_ARATH; Transcription factor bHLH94
TrEMBL	A0A0D9XEN1	0.0	A0A0D9XEN1_9ORYZ; Uncharacterized protein
STRING	LPERR09G09700.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	1e-46	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]