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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR09G09700.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 342aa MW: 36439.1 Da PI: 5.7086 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR09G09700.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 42.1 | 1.5e-13 | 126 | 177 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr l+P++ ++++ + a+i+ A++++k+L+
LPERR09G09700.1 126 QRMTHIAVERNRRKQMNDYLAVLRGLMPPS---YAQRGDQASIVGGAINFVKELE 177
79****************************...*******************995 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MALEAVLLSR RGDLFGLGGR CAMEGGGIGS GDGAAWSNPF ISGFEGVMDL DGGNWDAAAC 60 SSMLLHGFQE LEIPAAAVQP PPGEPEPAGR VGGGGQEDQA GTAAQAGRRK RRRARAVKNK 120 EEVESQRMTH IAVERNRRKQ MNDYLAVLRG LMPPSYAQRG DQASIVGGAI NFVKELEQLL 180 QSLEARKSSR QCAAGDAASP PFASFFTFPQ YSMSAAAAIP ATAPVVNDAD RRDDGGAGAE 240 AEVWGSKPSA VADVEVTMVE SHANLRVLSR RRPRQLLRLV VALQGQRLTV LHLNMTSAGH 300 MVLYSFSLKV EDGCQLTSVD EIATAAHQII EQIQEEQGCS LD
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 108 | 112 | RKRRR |
2 | 126 | 137 | RMTHIAVERNRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005399 | 1e-158 | AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02. |
GenBank | AP005574 | 1e-158 | AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08. |
GenBank | AP014965 | 1e-158 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
GenBank | CP012617 | 1e-158 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |