|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LPERR09G09120.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
Family |
bHLH |
Protein Properties |
Length: 251aa MW: 26886.4 Da PI: 6.9675 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR09G09120.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 25.7 | 2e-08 | 169 | 209 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri +++ L++l+P +K++ a++L +A++Y+k L
LPERR09G09120.1 169 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 209
699*****************87.....8****************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MDFDLFNSYP ESQLDLMSTM LQLEQLTALT DQTLLMAAPT SPPISPMGTP SPQFSPPPPH 60 MSITTTTTTN GGYHDQYNSM PATYGSTACA MPQQLDFAIS SPGSDSGSGS GGAPHQGSSP 120 TASASSSEAM REMIFHIAAL QPVEIDPEAV RPPKRRNVRI SKDPQSVAAR LRRERISERI 180 RILQRLVPGG TKMDTASMLD EAIHYVKFLK SQVQSLERAA AATAGVAAAH RSAAFGAAYP 240 ATLPLQHHAP W
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 150 | 155 | RPPKRR |
2 | 169 | 174 | RLRRER |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK060477 | 1e-148 | AK060477.1 Oryza sativa Japonica Group cDNA clone:001-012-F09, full insert sequence. |
GenBank | AK070458 | 1e-148 | AK070458.1 Oryza sativa Japonica Group cDNA clone:J023048E05, full insert sequence. |
GenBank | AP005655 | 1e-148 | AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07. |
GenBank | AP006057 | 1e-148 | AP006057.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1342C04. |
GenBank | AP014965 | 1e-148 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Vercruyssen L, et al.
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518] - Sparks EE,Benfey PN
HEC of a job regulating stem cells. Dev. Cell, 2014. 28(4): p. 349-50 [PMID:24576420] - Zhu L, et al.
A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis. Plant Cell, 2016. 28(4): p. 855-74 [PMID:27073231] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] - Boex-Fontvieille E, et al.
An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656] - Gaillochet C, et al.
Control of plant cell fate transitions by transcriptional and hormonal signals. Elife, 2018. [PMID:29058667]
|