PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G09110.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 404aa    MW: 42997.2 Da    PI: 8.4064
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G09110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.2e-35261192103
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll
  LPERR09G09110.1  26 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQLL 110
                      9********************6667*****************************************999.........**************** PP

                      XXXXXXXXX CS
     HSF_DNA-bind  95 ekikrkkse 103
                      ++i+r+k++
  LPERR09G09110.1 111 CEIHRRKTS 119
                      ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3615111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5822116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.53E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-3026116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MERCGSWSSD CEAAAAAAQK AVPAPFLTKT YQLVDDPATD HIVSWGDDRV STFVVWRPPE  60
FARDILPNYF KHNNFSSFVR QLNTYGFRKV VPERWEFANE FFRKGEKQLL CEIHRRKTSS  120
ASTASPSPPP FFAPPHFPLF HHPGVAAAAA AQHHHHHPFV GDDGVVAAHG IGMPFPQPHW  180
RGEPVPTRLL ALGGPAPSSA SAAADSGGAG RAATAAVLME ENERLRRSNT ALLQELAHMR  240
KLYNDIIYFV QNHVRPVAPS PAAAAFLQGI GMPARKKPSA VNVLNNSGGS TTSSSSLTIA  300
EEPSPPPQQQ QHPLAADKSG GEAGSSSAAR SSAPTMLFGV HLSAATCGAG SKRSSSPDEH  360
PPTSPARKPR LVLECDDLSL TVAPSSSSPQ QQPPSAASSP TSIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-221511819131Heat shock factor protein 1
5d5v_B5e-221511819131Heat shock factor protein 1
5d5v_D5e-221511819131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G09110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411900.0AK241190.1 Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611002.10.0heat stress transcription factor B-4c
SwissprotQ67U940.0HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0D9XEG00.0A0A0D9XEG0_9ORYZ; Uncharacterized protein
STRINGLPERR09G09110.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-58heat shock transcription factor B4