PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G08720.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 347aa    MW: 36104.1 Da    PI: 6.07
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G08720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-18165219256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  LPERR09G08720.1 165 RKKLRLSKEQSAFLEDSFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 219
                      788899***********************************************98 PP
2HD-ZIP_I/II127.46e-41165255192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  LPERR09G08720.1 165 RKKLRLSKEQSAFLEDSFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 255
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-18149215IPR009057Homeodomain-like
SuperFamilySSF466891.88E-18155222IPR009057Homeodomain-like
PROSITE profilePS5007116.973161221IPR001356Homeobox domain
SMARTSM003896.5E-16163225IPR001356Homeobox domain
CDDcd000862.18E-17165222No hitNo description
PfamPF000463.0E-15165219IPR001356Homeobox domain
PROSITE patternPS000270196219IPR017970Homeobox, conserved site
CDDcd146866.32E-4212253No hitNo description
SMARTSM003401.4E-24221264IPR003106Leucine zipper, homeobox-associated
PfamPF021831.3E-10221255IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MELGLSLGET AMADAGRELV LGLGIGVTRE EAAAAATAET ARRELEFGSS RCGGSSPEPT  60
VRLTLLPMVP GLGGLSWPPS ETRGFDVNRP PSCGAGAGAG AEEEEQDDAA GAALSSSPNN  120
SAGSFPMDDF SGHGRDAAAA AGGGGGGGER SCSRASDEDD GGSARKKLRL SKEQSAFLED  180
SFKEHSTLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLTEE  240
NRRLQKELAE LRALKTVHPF YMHLPATTLS MCPSCERVAT NSAPATAAAV AASSTAGPTT  300
SAGIASAGGA AAAPDHRPSS FAALFTSPRG FPLSSGQQQQ QQPPTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G08720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364471e-154BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269111e-154KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611029.11e-161homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-162HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A0D9XEA70.0A0A0D9XEA7_9ORYZ; Uncharacterized protein
STRINGLPERR09G08720.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-65homeobox from Arabidopsis thaliana