PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G05860.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 277aa    MW: 29780 Da    PI: 5.2383
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G05860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.3e-1957111356
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k +++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  LPERR09G05860.1  57 KSRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 111
                      44589*************98**********************************9 PP
2HD-ZIP_I/II119.51.8e-3856147191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +k rrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE d+ +L++a+d+l + +++L +++++Lr+++
  LPERR09G05860.1  56 RKSRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLELDFGRLRAAHDQLLAGRDALAADNQSLRSQV 147
                      589****************9999******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-1847115IPR009057Homeodomain-like
PROSITE profilePS5007117.86452113IPR001356Homeobox domain
SMARTSM003893.0E-1755117IPR001356Homeobox domain
CDDcd000863.80E-1756114No hitNo description
PfamPF000466.2E-1757111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-1962112IPR009057Homeodomain-like
PRINTSPR000312.7E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000312.7E-693109IPR000047Helix-turn-helix motif
PfamPF021833.2E-13113155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDNSGLLNFS SAGAGAGVGG GGGEMLLFGG HVVDEMDLVD ELYEYGGVEL EGRNGRKSRR  60
LTAEQVRALE RSFEEEKRKL EPERKSELAR RLGIAPRQVA VWFQNRRARW KAKQLELDFG  120
RLRAAHDQLL AGRDALAADN QSLRSQVILL TEKLQANGKS PSSSPAPTVQ TAVPTTHSTA  180
LEAKIPKFHL EEVYAAGGGS TITGGGAMPA PPALHHANGR EASDSPESYF AGARSPPSSS  240
EDDGGDEPSS SVLLPNTVFI GASFEEAPPN SWEWFWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G05860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0978532e-50FP097853.1 Phyllostachys edulis cDNA clone: bphyem205k19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661183.13e-99PREDICTED: homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC15e-96HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A0D9XD880.0A0A0D9XD88_9ORYZ; Uncharacterized protein
STRINGLPERR09G05860.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-29homeobox 1