 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR09G05860.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 277aa MW: 29780 Da PI: 5.2383 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR09G05860.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.4 | 1.3e-19 | 57 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k +++t+eq+++Le+ Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k
LPERR09G05860.1 57 KSRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 111
44589*************98**********************************9 PP
|
| 2 | HD-ZIP_I/II | 119.5 | 1.8e-38 | 56 | 147 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+k rrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE d+ +L++a+d+l + +++L +++++Lr+++
LPERR09G05860.1 56 RKSRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLELDFGRLRAAHDQLLAGRDALAADNQSLRSQV 147
589****************9999******************************************************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MDNSGLLNFS SAGAGAGVGG GGGEMLLFGG HVVDEMDLVD ELYEYGGVEL EGRNGRKSRR 60
LTAEQVRALE RSFEEEKRKL EPERKSELAR RLGIAPRQVA VWFQNRRARW KAKQLELDFG 120
RLRAAHDQLL AGRDALAADN QSLRSQVILL TEKLQANGKS PSSSPAPTVQ TAVPTTHSTA 180
LEAKIPKFHL EEVYAAGGGS TITGGGAMPA PPALHHANGR EASDSPESYF AGARSPPSSS 240
EDDGGDEPSS SVLLPNTVFI GASFEEAPPN SWEWFWN
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 105 | 113 | RRARWKAKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP097853 | 2e-50 | FP097853.1 Phyllostachys edulis cDNA clone: bphyem205k19, full insert sequence. |
