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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G05410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 29764.1 Da PI: 6.947 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 7e-21 | 104 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g LPERR09G05410.1 104 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 153 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.92E-31 | 103 | 163 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.2E-33 | 104 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-35 | 104 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-23 | 104 | 163 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.354 | 104 | 161 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-15 | 105 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 105 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MAAAIDLSGE ELMRALEPFI RDASGSPPPV YSQFSPTSPF SFPYFQAQPE LSPAQMHYIQ 60 ARLHLQRQAA AQSGPLGPRS QPMKVAVSSS SSPAAATPPR LQKLYRGVRQ RHWGKWVAEI 120 RLPRNRTRLW LGTFDTAEEA ALAYDQAAYR LRGDAARLNF PDNAASRGPL HASVDAKLQT 180 LCQNIAAAKN AKKSSSSAAI SASASASASA STPTSNCSSP SSDDASSSVE SADSSPAATV 240 PEMQQLDFSE APWDEAAAFA LTKYPSYEID WDSLLATN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 103 | 161 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 103 | 161 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G05410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005525 | 1e-168 | AP005525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0564H06. | |||
GenBank | AP005580 | 1e-168 | AP005580.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1759_F09. | |||
GenBank | AP014965 | 1e-168 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY305028 | 1e-168 | AY305028.1 Oryza sativa (japonica cultivar-group) DRE binding factor 2 (DBF2) mRNA, complete cds. | |||
GenBank | CT830564 | 1e-168 | CT830564.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F08, full insert sequence. | |||
GenBank | HQ858824 | 1e-168 | HQ858824.1 Oryza sativa Japonica Group isolate UT1322 AP2-EREBP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612138.1 | 1e-135 | ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | A0A0D9XD26 | 0.0 | A0A0D9XD26_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G05410.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 3e-39 | ERF family protein |