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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G05230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 129aa MW: 14605.8 Da PI: 10.4731 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.9 | 1e-07 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ nL+ H r H LPERR09G05230.1 43 FVCEVCSKRFKQEQNLQMHRRAH 65 89*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.86E-6 | 40 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-7 | 42 | 65 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.1E-5 | 43 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.676 | 43 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0014 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 57 | 84 | 115 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MTDESSSSPA TKKAKKPSVP VTPAGPAEVI ALSPKTLLAT NQFVCEVCSK RFKQEQNLQM 60 HRRAHNLPWS LKRKEVNPAR RQVYVCPEPT CVHHDPAACA LTDLSAIRKH FRSKHGGKNR 120 HYYDKVYRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G05230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017227341.1 | 3e-44 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_017227342.1 | 3e-44 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like | ||||
Swissprot | Q9ZUL3 | 3e-41 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A0D9XD06 | 8e-92 | A0A0D9XD06_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G05230.1 | 1e-92 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 4e-41 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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