 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR09G05130.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
LBD |
| Protein Properties |
Length: 306aa MW: 32187.6 Da PI: 5.3435 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR09G05130.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 117.5 | 7.9e-37 | 44 | 144 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
aCaaCk++rrkC++dC+la+yfpa+++++f+n+h+lFG+sn++k+l+++p+e + dam++l++eA+ara dPv Ga++++++l ql+ + +el
LPERR09G05130.1 44 ACAACKYQRRKCNADCPLARYFPADDQRRFQNAHRLFGVSNIQKTLRRTPPELHADAMQALTFEADARAADPVGGAARLVKELDLQLKAVYSEL 137
7********************************************************************************************* PP
DUF260 95 allkeel 101
++++++
LPERR09G05130.1 138 LSVHHQI 144
9999986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MTSTTKSNSI SSSTTTTTNS SPNPPRNAAA RVGIGGGGGG QSQACAACKY QRRKCNADCP 60
LARYFPADDQ RRFQNAHRLF GVSNIQKTLR RTPPELHADA MQALTFEADA RAADPVGGAA 120
RLVKELDLQL KAVYSELLSV HHQIMLHQAA AAAAAAASEN SLPPGMIFSG AGENEEDAMV 180
DSFYVDQQVA EQYLVKDEVQ PCLYYETAAA GDEGSSHAWT SGDNGGGENS TPMVLSDQLR 240
QHYQIDQAAQ VFDVKPEVTM VGHVDGGVVV GQTETKVAAA KAGSPSSSSA EAAAAARCQL 300
ELGRSL
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005675 | 2e-78 | AP005675.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1001_G09. |
| GenBank | AP014965 | 2e-78 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 2e-78 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
