PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G03450.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 372aa    MW: 39555.7 Da    PI: 7.8683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G03450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05186205120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C  C+k+F+r  n++ H+
  LPERR09G03450.1 186 FSCAVCNKTFNRFNNMQMHM 205
                      89*****************9 PP
2zf-C2H213.60.0002286308123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C  Cgk+F  + + ++H +++
  LPERR09G03450.1 286 YACRRCGKRFAVRGDWRTHEKNC 308
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.58E-5181207No hitNo description
SMARTSM003550.64186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055186213IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-5186205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SMARTSM00355220249281IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-6272306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.15E-6272306No hitNo description
SMARTSM0035558286306IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704286306IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MHPQIQYHHH QHHSHIAPPS KHGGGVAGAG EDDDQSMLLL SLWPPGHTHP HHHHAAGAAS  60
SSSSSSSIST AAAHATTASS WFNPSNYHGG GGGGGGGGLL FQEQEPNVSI SLSIAPPCNG  120
HAGVNAIPPP AATSSGGGMS FSSPVPPHHH HHHHHPPPSP AGGGGQVPSQ YWIPSAAEIL  180
VGSTQFSCAV CNKTFNRFNN MQMHMWGHGS QYRKGSESLR GAITTTTTSS SAAAAVASPP  240
ASLMRLPCYC CAEGCRNNID HPRARPLKDF RTLQTHYRRK HGARPYACRR CGKRFAVRGD  300
WRTHEKNCGK LWFCVCGSDF KHKRSLKDHV RSFGGGHAPH IVESVAVDDD EDDDDAGVGN  360
DDGDTSDVMH LV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G03450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172443.11e-146zinc finger protein WIP6-like
SwissprotQ9FX682e-96ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A0D9XCB70.0A0A0D9XCB7_9ORYZ; Uncharacterized protein
STRINGLPERR09G03450.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.13e-93C2H2-like zinc finger protein