PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G02630.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 304aa    MW: 34606.4 Da    PI: 8.9936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G02630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024157176120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      + Cp C k+Fsr  nL+ H+
  LPERR09G02630.1 157 FACPVCCKTFSRYNNLQMHM 176
                      78*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-5148179No hitNo description
PROSITE profilePS5015710.284157184IPR007087Zinc finger, C2H2
PfamPF138948.3E-4157179No hitNo description
Gene3DG3DSA:3.30.160.601.5E-6157176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MANQSQDHFF PFQRSLIPRS SSPHNSIPKR EKTPLLSLLP SSYDHNMIHG CGHNHKQEKE  60
EEAMEDVDIS LQIALPSSNL NSSSLDLAKN HLHVLGAATA MASQELDSDN RKVEVELEEE  120
QEASDDLCLD YFSVGKLTKG KYWIPTPTQI LIGPTHFACP VCCKTFSRYN NLQMHMWGHG  180
SQYRRGPSSL RGTQPAAMLR LPCFCPAAGC RNNVDHSRAR PLKDFRTLQT HYKRKHCAKP  240
FACRKCAKPL AVRGDWRTHE KNCGRRWHCA CGSDFKHKRS LKDHIRAFGR DHLERPPPPQ  300
QQLP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G02630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611093.11e-170zinc finger protein WIP2
SwissprotQ8W0319e-97ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A0D9XC090.0A0A0D9XC09_9ORYZ; Uncharacterized protein
STRINGLPERR09G02630.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-96C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]