PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G00660.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 390aa MW: 42816.6 Da PI: 9.2804

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G00660.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.0009	291	312	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 y+C +Cgk F++ L H r LPERR09G00660.1 291 YVCDNCGKEFTNGRALGGHKRH 312 9**********99888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.6E-5	291	312	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.845	291	319	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MAPSSIPLLE SERPIGSFRF LAPHQPSHGQ SKGGKFPNTV GGQRQGAAVL WRSSSLPLHH 60 GVKYGHALVG RGGGMHPYEL GSSSSVVPAD NWILRSADVQ SHCNVIESGR CEDGHGKHVQ 120 QPLASSPAME MLFEERILTS EVVAQKRRLH GYEERSFFPC METMVVQLPG WTSSGCLGQR 180 GPTRDLEKLP ESWKREGSET HIKPQLVPEG LVNDFHKQTF VNVVVPPPNI SETFYHPGQL 240 GDHCTIEKHN EMRVPKGLHH NIDISIAMEA TKGAFHKSAG STKLNKKKRL YVCDNCGKEF 300 TNGRALGGHK RHPCSGQRQV GKRNGGKPST WVAGASIHDS IAPHTFIFPN QEDEVRPLLT 360 AGTPLNGIPR GGFRLFGTNI IETSKEKPME

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MAPSSIPLLE SERPIGSFRF LAPHQPSHGQ SKGGKFPNTV GGQRQGAAVL WRSSSLPLHH  60
GVKYGHALVG RGGGMHPYEL GSSSSVVPAD NWILRSADVQ SHCNVIESGR CEDGHGKHVQ  120
QPLASSPAME MLFEERILTS EVVAQKRRLH GYEERSFFPC METMVVQLPG WTSSGCLGQR  180
GPTRDLEKLP ESWKREGSET HIKPQLVPEG LVNDFHKQTF VNVVVPPPNI SETFYHPGQL  240
GDHCTIEKHN EMRVPKGLHH NIDISIAMEA TKGAFHKSAG STKLNKKKRL YVCDNCGKEF  300
TNGRALGGHK RHPCSGQRQV GKRNGGKPST WVAGASIHDS IAPHTFIFPN QEDEVRPLLT  360
AGTPLNGIPR GGFRLFGTNI IETSKEKPME

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G00660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9XBB3	0.0	A0A0D9XBB3_9ORYZ; Uncharacterized protein
STRING	LPERR09G00660.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16216	12	13