PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G00550.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 400aa MW: 43880.4 Da PI: 10.3753

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G00550.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	295	317	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+ksF++ L H ++H LPERR09G00550.1 295 YICSECKKSFPSGQALGGHVKSH 317 89**************9999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.9E-6	293	322	No hit	No description
Pfam	PF13912	2.6E-11	295	318	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.614	295	322	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	297	317	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MAPFWISSLE SERPVGSYHS NVSAQPPRIQ AERGKRHTVI GGHGQGGIAR WRRRSMPLAL 60 RPYSAVEHSR GRVDGSGRQD PSKSISSTVV LPTGMGIWRS VVGQDRWNVI DGGQFVDQPL 120 APSAVKAVLP EEQIFNSAAV AQGQQAHGYE KRAFLPYLTT TMAMQRAPGE ISSGKFGNKE 180 HEEHNNHTVL PSWTPTGHHG SSNSTECVEK LLVPGKLAQR EDFVIGTHKQ ASMTVAAPPP 240 NISEITGYFS ARKNCEMMEP KGLQHSVDFS FAKESRMIEF RSLDSSVRQN MRGPYICSEC 300 KKSFPSGQAL GGHVKSHNSR KRTPAQRDDG RPTGWVASTS LTLVSPNSIA MNGSSNPRTM 360 SVPNQKREVL AAAHINNIRR GSFRLFGNNI VEAPKEEPME

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MAPFWISSLE SERPVGSYHS NVSAQPPRIQ AERGKRHTVI GGHGQGGIAR WRRRSMPLAL  60
RPYSAVEHSR GRVDGSGRQD PSKSISSTVV LPTGMGIWRS VVGQDRWNVI DGGQFVDQPL  120
APSAVKAVLP EEQIFNSAAV AQGQQAHGYE KRAFLPYLTT TMAMQRAPGE ISSGKFGNKE  180
HEEHNNHTVL PSWTPTGHHG SSNSTECVEK LLVPGKLAQR EDFVIGTHKQ ASMTVAAPPP  240
NISEITGYFS ARKNCEMMEP KGLQHSVDFS FAKESRMIEF RSLDSSVRQN MRGPYICSEC  300
KKSFPSGQAL GGHVKSHNSR KRTPAQRDDG RPTGWVASTS LTLVSPNSIA MNGSSNPRTM  360
SVPNQKREVL AAAHINNIRR GSFRLFGNNI VEAPKEEPME

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G00550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611340.1	1e-101	uncharacterized protein LOC4346425
TrEMBL	A0A0D9XBA1	0.0	A0A0D9XBA1_9ORYZ; Uncharacterized protein
STRING	LPERR09G00550.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16216	12	13