PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

ERF

Protein Properties

Length: 134aa MW: 14985.3 Da PI: 8.8464

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G20550.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.6	9.8e-21	17	69	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd ++ r++lg+f+taeeAa+a+++a+ +++g+ LPERR08G20550.1 17 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRAAYAMRGH 69 69******.7*****3...2236************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.3E-16	17	69	IPR001471	AP2/ERF domain
CDD	cd00018	7.48E-18	17	76	No hit	No description
SuperFamily	SSF54171	1.05E-22	18	76	IPR016177	DNA-binding domain
SMART	SM00380	6.1E-33	18	82	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.972	18	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.9E-30	18	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-10	19	30	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-10	42	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MDGGGWDDHG KDGGENTKYR GVRRRPSGKF AAEIRDSSRQ SVRVWLGTFD TAEEAARAYD 60 RAAYAMRGHL AVLNFPGEAR NYVRGGGSSS SSRQQQQQRQ VIELEYLDDE VLQEMLKGGD 120 DQHRSAGSSK RNNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-32	13	111	9	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G20550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	1e-108	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660393.1	5e-62	PREDICTED: ethylene-responsive transcription factor 14-like
Swissprot	Q9LTC5	2e-35	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A0D9XAZ4	9e-93	A0A0D9XAZ4_9ORYZ; Uncharacterized protein
STRING	LPERR08G20550.1	1e-93	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04370.1	1e-24	Ethylene-responsive element binding factor 14

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]