PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G20460.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 399aa    MW: 42387.7 Da    PI: 8.3885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G20460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07208230123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  LPERR08G20460.1 208 HYCQVCGKGFKRDANLRMHMRAH 230
                      68*******************99 PP
2zf-C2H212.20.00056308331123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ Cg k+Fs  s+L++H + +
  LPERR08G20460.1 308 YVCNRCGrKHFSVLSDLRTHEKHC 331
                      9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.42E-6207233No hitNo description
Gene3DG3DSA:3.30.160.601.2E-6208235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034208230IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653208235IPR007087Zinc finger, C2H2
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
SMARTSM00355140270303IPR015880Zinc finger, C2H2-like
SMARTSM0035536308334IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MIPGGGGGGG GAISPYLQMQ SQHGGGLDGG MVDGGAGSFM GGDQQQPSAP PHCHALLYNL  60
SVLKDRVQQL YPLVNLAVTH NGAAHLDVSA ADAIIQEIVA AASSMMYTFQ LLCDIAAPPT  120
TTAPQHDAAA TAAVVQVKTN DDHGGDHQQL VNDHDDHLMQ QQQWHDYNNS SSHHPPPVFR  180
RGETAAATAS TDTIIELDAA ELLAKFTHYC QVCGKGFKRD ANLRMHMRAH GDEYKSKAAL  240
SNPTKLLAKA GGAGGEDAGS GISSPAARKY SCPQEGCRWN RRHAKFQPLK SVICAKNHYK  300
RSHCPKMYVC NRCGRKHFSV LSDLRTHEKH CGDHRWVCSC GTSFSRKDKL VGHVALFAGH  360
QPVVPLDAAP RGGKRQRSSA AAVAGNNIDG ATGIGSMGA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G20460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632901e-118AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045871e-118AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055441e-118AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149641e-118AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-118CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649514.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT247e-99STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0D9XAY50.0A0A0D9XAY5_9ORYZ; Uncharacterized protein
STRINGLPERR08G20460.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-95C2H2 family protein