PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G19920.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 538aa    MW: 56288 Da    PI: 9.0756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G19920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-0592114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  LPERR08G19920.1  92 FVCEVCNKGFQREQNLQLHRRGH 114
                      89*******************88 PP
2zf-C2H213.20.00026168190123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +t+
  LPERR08G19920.1 168 WKCDKCNKRYAVQSDWKAHSKTC 190
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.3E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-791114No hitNo description
PROSITE profilePS5015711.09492114IPR007087Zinc finger, C2H2
PfamPF121713.5E-592114IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004192114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4156189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-7163188No hitNo description
SMARTSM00355110168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MAAASSAHFF GLTDPQMQQQ PPLQNNTATP ATAAATATPP LKKKRNQPGN PSKYITLNNQ  60
LTIDRCVSII NPDPDAEVIA LSPHTLMATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL  120
KQKNPKETRR RVYLCPEPSC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCNKRYAVQ  180
SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA QDRMPIADAV VYGAAVAGMA  240
AQQAQLQSQF HQAPADVSHS GAGANVNAAA QFDHHLMLLS PSSATPHSTS SSTSPFYLAG  300
CGGAADDASL IHGKPSFHHH GGLMQLPDQH NNGGGILNLG YFSGGGHHQD ARLVFPENRF  360
TGSGSETGSA TVFSGNMIGG GGGGFFSNQN IAPPQMSATA LLQKAAQMGA TTSGGGGGAA  420
AAGSVNSLLR GFGSGGGKID GGGGVGGLIM SGEMSSTSRS NSSQTAAAAE NESQLRGMMM  480
NTLAAATGGG GFADVDDGNL STRDFLGVNR GGGGGGAVGI RMRHGGGMGM GSLDQEMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-32164222361Zinc finger protein JACKDAW
5b3h_F3e-32164222361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435443GGKIDGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G19920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0721281e-159AK072128.1 Oryza sativa Japonica Group cDNA clone:J013124C13, full insert sequence.
GenBankAK0998301e-159AK099830.1 Oryza sativa Japonica Group cDNA clone:J013105K20, full insert sequence.
GenBankCT8321831e-159CT832183.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204B21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695695.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like, partial
TrEMBLA0A0D9XAQ60.0A0A0D9XAQ6_9ORYZ; Uncharacterized protein
STRINGLPERR08G19920.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-102C2H2-like zinc finger protein