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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
LPERR08G19100.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 271aa MW: 28899.8 Da PI: 6.8715 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR08G19100.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 31.2 | 4e-10 | 105 | 149 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h e+Er+RR+++N +f Lr +P +++Ka+ L A YI +L
LPERR08G19100.1 105 HVEAERQRREKLNRRFCDLRAAVPVV-----SRMDKASLLADAAAYIVDL 149
889**********************5.....49**************777 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MDELVSPYNS SCSGTAFPAM LELDFCDVPD QWLLGLNVVD DDAMAAWAAP PSRSVSSDVV 60 SSIPLSSATV IIREERNKTT PTRRRGRKPA GSTRGGGGAA PPIGHVEAER QRREKLNRRF 120 CDLRAAVPVV SRMDKASLLA DAAAYIVDLR RRVNSLEAAA AAAARIDNTA AAGDGVEEDD 180 GRLEVRMVGR DAAAVRLTTR AETRHAAARM MCALRALDLA VQHASVTRVG GGGATVQDVM 240 VDVPAAFHDE ACLRAALLHM LRHHDTTAVD V
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 4e-17 | 98 | 158 | 2 | 62 | Transcription factor MYC2 |
5gnj_B | 4e-17 | 98 | 158 | 2 | 62 | Transcription factor MYC2 |
5gnj_E | 4e-17 | 98 | 158 | 2 | 62 | Transcription factor MYC2 |
5gnj_F | 4e-17 | 98 | 158 | 2 | 62 | Transcription factor MYC2 |
5gnj_G | 4e-17 | 98 | 158 | 2 | 62 | Transcription factor MYC2 |
5gnj_I | 4e-17 | 98 | 158 | 2 | 62 | Transcription factor MYC2 |
5gnj_M | 4e-17 | 98 | 158 | 2 | 62 | Transcription factor MYC2 |
5gnj_N | 4e-17 | 98 | 158 | 2 | 62 | Transcription factor MYC2 |
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