PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G18560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CO-like
Protein Properties Length: 485aa    MW: 51640 Da    PI: 5.1385
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G18560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.6e-06746437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     ++C+ ++e  + l+C+ +   lC  C  + H+       H
  LPERR08G18560.1  7 WVCDYCGEAAAALHCRADAARLCVACDRHVHSAnalsrkH 46
                     79*******9*******************99545565566 PP
2CCT43.79.9e-164474761645
              CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqae 45 
                      ++eK+irYesRK +A++R+RvKGrFvk++e
  LPERR08G18560.1 447 RYEKHIRYESRKLRADTRKRVKGRFVKSNE 476
                      79*************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-13451IPR000315B-box-type zinc finger
CDDcd000212.21E-8751No hitNo description
PROSITE profilePS501199.499851IPR000315B-box-type zinc finger
PROSITE profilePS5101710.258432474IPR010402CCT domain
PfamPF062032.6E-10447474IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MKESGGWVCD YCGEAAAALH CRADAARLCV ACDRHVHSAN ALSRKHFRSP LCSECSSRPA  60
SLRLLSSGDS SFLCSDCDES SHDSSSPPPP ASVRVPIEGF SGCPSAAELA ASWGIDIAGG  120
GDAGGEEEED DPFFSALDYS MLAVDPVMRD LYVPCDPPEI AAGGGGGRRL KGEALGHQLA  180
EMARREAETA ANPNPNPHSD LSPRTPRRTS AAASGRLQQQ QEKQAPPPPP LPPAAARDAA  240
LPYTSLLMMA PVNCNELMDS DRVGGGDEDE NVLWESTPPS VPPTQIWDFN LGKSRDHNEN  300
SALEVGFSSN NGGFMIKSYN DMLKEISSGA TKDLEDIYDS RYCATAEDIM STNVCQLSSK  360
NPSSGSHKRK ASSCASTIDG PTTSTNHVNV ASGALGGCNS HDRAAAITKE ISFCDQTVVP  420
TGGADRPSAI KIDSETLAQN RDNAMQRYEK HIRYESRKLR ADTRKRVKGR FVKSNEAANY  480
DGNGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G18560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649825.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A0D9XA790.0A0A0D9XA79_9ORYZ; Uncharacterized protein
STRINGLPERR08G18560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-20B-box type zinc finger protein with CCT domain