PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G17860.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 396aa    MW: 41790.4 Da    PI: 6.3768
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G17860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09206253455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  LPERR08G17860.1 206 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 253
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16200267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-9200257No hitNo description
Gene3DG3DSA:4.10.280.107.6E-16202265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6206253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDGGRAGGVG GGDYISSLLN SSPRLDFGLL SDGVVSGAGA GGGGDCLEKL CGDPGFAERA  60
ARLSSFNGYR YGGVGGDGGL FGMPPPAPAA AAAGAGGSRE ASSVSDPASA MKDAANGKKR  120
KATNAKGKGQ VGEERELSDG KRSKMNEIDK KENPVKPKAE QAGSDSSVED GGGAGQKQGK  180
GKNAKPVEPP KDYVHVRARR GQATDSHSLA ERVRRERISQ RMKVLQDLVP GCNKVIGKAL  240
MLDEIINYVQ SLQRQVEFLS MKLATVNPLD FSNLPTLLQK DMYQACGPSA SSVFSLESSN  300
SAFPFAEQGD VFQQFAPNSM ESQCTLNQLD LALSQATNGQ YAFQDGTTSA NLQQRNFWDD  360
DLQSVFHLEN GQSQDNGVSV PSFHGQLQAG HMKMEF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G17860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0720410.0AK072041.1 Oryza sativa Japonica Group cDNA clone:J013105J01, full insert sequence.
GenBankAK0992910.0AK099291.1 Oryza sativa Japonica Group cDNA clone:J023127C06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755590.10.0transcription factor bHLH78 isoform X2
TrEMBLA0A0D9X9Z30.0A0A0D9X9Z3_9ORYZ; Uncharacterized protein
STRINGLPERR08G17860.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-54bHLH family protein