PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G16800.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 395aa    MW: 41274 Da    PI: 7.9375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G16800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.3e-13325370655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  LPERR08G16800.1 325 SIAERVRRTRISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 370
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.932319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15322379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-12323374No hitNo description
Gene3DG3DSA:4.10.280.106.7E-15324385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-10325370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-12325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPPMS SSGLLRYRSA PSSVLGEFCD DFLPAAAPPP PPQPRAASPD  60
AADNVFSRFL ADHQIRDDKS PAPAPPPSAA AAAHFSDDPT SMASMFQHHH QQQQMVASVE  120
GLYRTVSSTG IDAAGAGSGV GGLIRQSSSP AGFLNHLSMD NGYGSMLRAG MAAGGVGGGG  180
FRNGASAAAA DSPGRLKGQL SFSSRQGSLM SQISEMGSEE LGGSSPEGAG GSGGGRGYLS  240
GYPMSSGWED SSQLMSDNIS GGVKRQRDSS EPAAAQNGGG GGLAHQFSLP KTSSEMAAIE  300
KFLQFQDAVP CKIRAKRGCA THPRSIAERV RRTRISERIR KLQELVPNMD KQTNTSDMLD  360
LAVDYIKDLQ KEVKVLNDSR ANCTCSASKH QQFSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G16800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001060.0AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804212.10.0transcription factor bHLH130-like
RefseqXP_025804213.10.0transcription factor bHLH130-like
TrEMBLA0A0D9X9K50.0A0A0D9X9K5_9ORYZ; Uncharacterized protein
STRINGLPERR08G16800.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-46bHLH family protein