PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G16800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 395aa MW: 41274 Da PI: 7.9375 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.3e-13 | 325 | 370 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +Av+YIk+Lq LPERR08G16800.1 325 SIAERVRRTRISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 370 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.932 | 319 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-15 | 322 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.85E-12 | 323 | 374 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.7E-15 | 324 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-10 | 325 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-12 | 325 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MYGSPVSKDL NLPVQPPPMS SSGLLRYRSA PSSVLGEFCD DFLPAAAPPP PPQPRAASPD 60 AADNVFSRFL ADHQIRDDKS PAPAPPPSAA AAAHFSDDPT SMASMFQHHH QQQQMVASVE 120 GLYRTVSSTG IDAAGAGSGV GGLIRQSSSP AGFLNHLSMD NGYGSMLRAG MAAGGVGGGG 180 FRNGASAAAA DSPGRLKGQL SFSSRQGSLM SQISEMGSEE LGGSSPEGAG GSGGGRGYLS 240 GYPMSSGWED SSQLMSDNIS GGVKRQRDSS EPAAAQNGGG GGLAHQFSLP KTSSEMAAIE 300 KFLQFQDAVP CKIRAKRGCA THPRSIAERV RRTRISERIR KLQELVPNMD KQTNTSDMLD 360 LAVDYIKDLQ KEVKVLNDSR ANCTCSASKH QQFSG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G16800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100106 | 0.0 | AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804212.1 | 0.0 | transcription factor bHLH130-like | ||||
Refseq | XP_025804213.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A0D9X9K5 | 0.0 | A0A0D9X9K5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G16800.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-46 | bHLH family protein |