PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G16240.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 729aa    MW: 79084.7 Da    PI: 7.1112
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G16240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.4e-33277333259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+g+H+h+
  LPERR08G16240.1 277 ADGYNWRKYGQKQVKNSEYPRSYYKCTYPNCPVKKKVERSQ-DGQITEIVYKGSHDHP 333
                      7****************************************.***************7 PP
2WRKY104.75e-33488546159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  LPERR08G16240.1 488 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 546
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-29272335IPR003657WRKY domain
SuperFamilySSF1182902.75E-26274335IPR003657WRKY domain
SMARTSM007742.3E-36276334IPR003657WRKY domain
PROSITE profilePS5081122.814278335IPR003657WRKY domain
PfamPF031062.8E-25278333IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-37473548IPR003657WRKY domain
SuperFamilySSF1182907.85E-29480548IPR003657WRKY domain
PROSITE profilePS5081137.539483548IPR003657WRKY domain
SMARTSM007744.0E-38488547IPR003657WRKY domain
PfamPF031063.0E-25489546IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDGTNNHGPL MDEVILPSPS PRTLMSSFSN EEFSSGPFSD IFGDNGSKKP YDGLGKSKAF  60
VDSSREESAQ LAKKFEPNFF GANQKSSPNG CLSERMAART GFGVLKIDTS RVGYSTPIRS  120
PVTIPPGVSP RELLESPVFL PNAIAQPSPT TGKLPFLMSS NVKQSIPKKT EDETRHDRSF  180
FFQSILGSKP PTFPVAEKGF IGSHQKHPSV NDNHQELSVQ SSSTAAKEVI TATIVKPKTS  240
DSMLDNDDHP SPVNDQEESV TNKNEEYSSD LIITPAADGY NWRKYGQKQV KNSEYPRSYY  300
KCTYPNCPVK KKVERSQDGQ ITEIVYKGSH DHPLPPSNRR PSVPFSQCND LKAHDESFGS  360
MSGQATATSW ENDTNSHLQD VHGEVLDTKL SASLTTTEHA GTSVMNKQEA VDISSTLSIE  420
EDNRVTNHTP LSLGYDGNED ESEYKRRKMD VYASASTSTN AIDIGAVASR AVREPRVVVQ  480
TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHPGCS VRKHVERASH DLKSVITTYE  540
GKHNHEVPAA RNSGHPSSGS AAAPQANGLH HRRREPAQGG TLSQFGGLAA YSSAGHQSAE  600
HFGSAAAAGF SFGMLPHGIT IPMPPTATAV PTQMAGHPPA MQGSMATAVP TQTAGHSPAL  660
QGYPGLVLPT DEMKVNLLPR FRLPVANGSI AEVPCQQPRN ADSSDNCKHR EALGEEKWSN  720
EGRTLGLIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37278549878Probable WRKY transcription factor 4
2lex_A8e-37278549878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G16240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650158.10.0probable WRKY transcription factor 2
RefseqXP_015650159.10.0probable WRKY transcription factor 2
RefseqXP_015650160.10.0probable WRKY transcription factor 2
RefseqXP_015650162.10.0probable WRKY transcription factor 2
RefseqXP_015650163.10.0probable WRKY transcription factor 2
RefseqXP_015650164.10.0probable WRKY transcription factor 2
RefseqXP_015650165.10.0probable WRKY transcription factor 2
RefseqXP_025883130.10.0probable WRKY transcription factor 2
RefseqXP_025883131.10.0probable WRKY transcription factor 2
TrEMBLA0A0D9X9D20.0A0A0D9X9D2_9ORYZ; Uncharacterized protein
STRINGLPERR08G16240.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-109WRKY DNA-binding protein 2