PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G15680.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 489aa    MW: 53110.6 Da    PI: 8.2363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G15680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.44.7e-17211259254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ L
  LPERR08G15680.1 211 RSKHSATEQRRRSKINDRFQLLRELLPHN----DQKRDKASFLLEVIEYIRFL 259
                      889*************************9....9*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-22208281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.914209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-18209283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-14211259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-15211264No hitNo description
SMARTSM003532.1E-12215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYAAAA TDYKQPAPAP PAQGFFLKTH DFLPQVEKRA DQPPPPPPSR  60
AQAADAATEK QLPHHQHAPP AATAAAAAFT ISHAATAVKQ EPPFAPWCQP VAAVDPRGYQ  120
WSLPFAARGV AVASRTQQQQ QQPPPPERKS GGGFMDAGSR SSGGAGFDDD DGLAARREVS  180
SSLKELTVRV EGKGGSCSGS AGTDQLPNTP RSKHSATEQR RRSKINDRFQ LLRELLPHND  240
QKRDKASFLL EVIEYIRFLR EKVQKYEVSY PEWNQENAKI VPWTNIYFRS SWKNAQNKSQ  300
TPADTSPDPP EHPKNGSSYV FPFTGNCDNN NAVETAAASG AHHQAETDPV SRTSYRSADT  360
PSPNNVADKV TSQRQAQLVR PSPAENCDML NNSDLAIDEG TISLSSQYSQ QLLNKLNHAL  420
ENSGLDLSQA SISVNLGKRA MKRSTPAATS TSKELTDPAC ESRAMGHQLR LGDGAEEHQA  480
SKRHKSDNT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G15680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650492.10.0transcription factor BIM2 isoform X2
TrEMBLA0A0D9X9610.0A0A0D9X961_9ORYZ; Uncharacterized protein
STRINGLPERR08G15680.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-45BES1-interacting Myc-like protein 2