PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G15600.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 359aa    MW: 38174.7 Da    PI: 6.105
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G15600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09181229355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  LPERR08G15600.1 181 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 229
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17175246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-11176233No hitNo description
PROSITE profilePS5088815.51178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16180246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-7181229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMDANGGNGF GVESNASPVN GMAMAWQWQG QMVQPSMDSL PWSSSPSTAV LVAGSDAASA  60
MTGGSFLPPP ATASVRGGFG HFPVASGGLR ESGNDDCSSD SKKKRTSEEI AGTDHANASS  120
NMLADSANET ECSKEANGEV NGPTTTTAAA GKSKGKGAKD AGEAQKEGYS HIRARKGQAT  180
NSHSLAERLR REKISERMKL LQDLVPGCSK VTGKALMLDE IINYVQSLQR QVEFLSMKLS  240
AVNTRIDFDI ESLVSNKDVL RFPGPPSSAP MGYSSPEKMP GLQLSQPGML QGGVHGMINP  300
GVFTSVIQKQ HQNDKGAFRQ PQMDQALDGS FHEMVQMTYP QVMGAEDLSI RQDQDGFHM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G15600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045572e-69AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBankAP0149642e-69AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-69CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650276.11e-176transcription factor bHLH79
TrEMBLA0A0D9X9520.0A0A0D9X952_9ORYZ; Uncharacterized protein
STRINGLPERR08G15600.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.31e-49cryptochrome-interacting basic-helix-loop-helix 5