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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR08G15600.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 359aa MW: 38174.7 Da PI: 6.105 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR08G15600.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 29.2 | 1.6e-09 | 181 | 229 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq
LPERR08G15600.1 181 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 229
58*************************9....556*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MMDANGGNGF GVESNASPVN GMAMAWQWQG QMVQPSMDSL PWSSSPSTAV LVAGSDAASA 60 MTGGSFLPPP ATASVRGGFG HFPVASGGLR ESGNDDCSSD SKKKRTSEEI AGTDHANASS 120 NMLADSANET ECSKEANGEV NGPTTTTAAA GKSKGKGAKD AGEAQKEGYS HIRARKGQAT 180 NSHSLAERLR REKISERMKL LQDLVPGCSK VTGKALMLDE IINYVQSLQR QVEFLSMKLS 240 AVNTRIDFDI ESLVSNKDVL RFPGPPSSAP MGYSSPEKMP GLQLSQPGML QGGVHGMINP 300 GVFTSVIQKQ HQNDKGAFRQ PQMDQALDGS FHEMVQMTYP QVMGAEDLSI RQDQDGFHM
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP004557 | 2e-69 | AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08. |
GenBank | AP014964 | 2e-69 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
GenBank | CP012616 | 2e-69 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G26260.3 | 1e-49 | cryptochrome-interacting basic-helix-loop-helix 5 |