PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G15350.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 330aa    MW: 35050.3 Da    PI: 5.3988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G15350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.1e-14121171154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++Y+k++
  LPERR08G15350.1 121 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINYVKEM 171
                      79****************************...9*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.8E-14119176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-14119176No hitNo description
SuperFamilySSF474594.32E-17120184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.732120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-11121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-11126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALEAVVFSE GYYFGCGGAM AAEAAAAGSG AWSWSHGYGG GVDYAKGITT EFVAADDDVG  60
VNAYLDGSSS SPVMAVVVPG LDDLDGGCSA AALPPAPAAA GGRRKRRRTR TVKNKEEVES  120
QRMTHIAVER NRRKQMNEYL AVLRSLMPPS YVQRGDQASI IGGAINYVKE MEQLLQSLEA  180
QRHARISAAD SELPFAGFFT FPQYSMSAAP TTTAAAAAAV ESGDGEEESS GSKQSAVADI  240
EVTMVESHAN LKVLTSRRRP RQLLRMVAGI QAHRLAVLHL NVASAGHMAL YSLSLKVEDD  300
CQLTSVDDIA AAVHGIVDTI EQEQQKQQQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103107RKRRR
2103108RKRRRT
3121132RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G15350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076261e-113AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588611e-113HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660228.11e-133PREDICTED: transcription factor bHLH94
SwissprotQ9C7T49e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D9X9190.0A0A0D9X919_9ORYZ; Uncharacterized protein
STRINGLPERR08G15350.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]