![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR08G15350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 330aa MW: 35050.3 Da PI: 5.3988 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.6 | 5.1e-14 | 121 | 171 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++Y+k++ LPERR08G15350.1 121 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINYVKEM 171 79****************************...9*****************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.8E-14 | 119 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.62E-14 | 119 | 176 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-17 | 120 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.732 | 120 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-11 | 121 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-11 | 126 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MALEAVVFSE GYYFGCGGAM AAEAAAAGSG AWSWSHGYGG GVDYAKGITT EFVAADDDVG 60 VNAYLDGSSS SPVMAVVVPG LDDLDGGCSA AALPPAPAAA GGRRKRRRTR TVKNKEEVES 120 QRMTHIAVER NRRKQMNEYL AVLRSLMPPS YVQRGDQASI IGGAINYVKE MEQLLQSLEA 180 QRHARISAAD SELPFAGFFT FPQYSMSAAP TTTAAAAAAV ESGDGEEESS GSKQSAVADI 240 EVTMVESHAN LKVLTSRRRP RQLLRMVAGI QAHRLAVLHL NVASAGHMAL YSLSLKVEDD 300 CQLTSVDDIA AAVHGIVDTI EQEQQKQQQS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 103 | 107 | RKRRR |
2 | 103 | 108 | RKRRRT |
3 | 121 | 132 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR08G15350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK107626 | 1e-113 | AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence. | |||
GenBank | HQ858861 | 1e-113 | HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660228.1 | 1e-133 | PREDICTED: transcription factor bHLH94 | ||||
Swissprot | Q9C7T4 | 9e-74 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A0D9X919 | 0.0 | A0A0D9X919_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G15350.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72210.1 | 5e-70 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|